JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CABYR_chr18_24134062_24166600	0/0	a0004	380	2	2	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	a0005	380	2	2	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	a0006	380	2	1	1	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	a0007	266	1	0	1	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CACFD1_chr9_133454978_133475848	1/1	a0001	172	416	95	79	178	16	46	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	a0002	172	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	a0003	172	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	a0004	172	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	a0005	184	1	0	1	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACHD1_chr1_64465129_64698053	0/1	a0001	1274	162	75	40	26	8	12	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	a0002	1274	1	1	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	a0003	1274	1	1	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	1/0	a0004	1274	1	0	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	a0005	1274	1	1	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACNA1A_chr19_13201442_13511479	0/0	a0001	2504	62	27	19	9	1	6	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	1/1	a0002	2506	37	6	11	10	3	5	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0003	2505	21	10	3	6	1	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0004	2500	9	2	0	3	1	3	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0005	2504	8	1	3	4	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0006	2506	7	0	2	3	0	2	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0007	2507	7	1	0	6	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0008	2506	7	0	3	1	0	3	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0009	2501	5	0	1	2	0	2	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0010	2500	4	3	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0011	2504	4	1	0	0	1	2	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0012	2507	3	0	2	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0013	2504	3	0	0	3	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0014	2499	3	1	0	0	0	2	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0015	2504	2	2	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0016	2505	2	2	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0017	2504	2	2	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0018	2505	2	2	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0019	2495	2	0	0	2	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0020	2503	2	2	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0021	2505	2	2	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0022	2506	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0023	593	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0024	2500	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0025	2495	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0026	2500	1	0	0	0	1	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0027	2499	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0028	2505	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0029	2501	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0030	2510	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0031	2511	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0032	2500	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0033	2504	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0034	2506	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0035	2497	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0036	2506	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479