JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CACNA1A_chr19_13201442_13511479	0/0	a0037	2504	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0038	2500	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0039	2501	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0040	2500	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0041	2507	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0042	2502	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0043	2504	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0044	2503	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	a0045	2507	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1B_chr9_137872782_138129619	0/0	a0001	2334	114	32	6	64	2	10	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	1/1	a0002	2339	82	16	13	34	4	13	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0003	2339	13	0	8	0	1	4	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0004	2339	9	8	1	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0005	2339	4	3	0	0	1	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0006	2339	4	4	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0007	2334	3	3	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0008	2334	3	0	0	3	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0009	2334	3	3	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0010	2339	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0011	2339	1	0	0	0	0	1	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0012	2339	1	0	0	0	0	1	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0013	2339	1	0	0	0	0	1	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0014	2334	1	0	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0015	2334	1	0	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0016	2339	1	0	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0017	2334	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0018	2334	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0019	2334	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0020	2339	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0021	2334	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	a0022	2339	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1C_chr12_2047987_2702950	0/0	a0001	2138	91	57	11	10	2	11	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	a0002	2138	5	5	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	a0003	2138	4	3	1	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	a0004	2138	2	2	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	a0005	2138	1	0	0	0	0	1	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	a0006	2138	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1D_chr3_53489611_53818733	1/1	a0001	2181	206	79	37	50	14	24	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	a0002	2181	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	a0003	2181	1	0	0	1	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	a0004	2181	1	0	1	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	a0005	2181	1	0	0	1	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1E_chr1_181478517_181813084	1/1	a0001	2313	115	47	27	21	4	14	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	a0002	2313	48	10	12	16	3	7	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	a0003	2313	30	6	7	8	0	9	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	a0004	2313	4	0	4	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	a0005	2313	2	2	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	a0006	2313	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	a0007	2313	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	a0008	2313	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084