JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CACNA1H_chr16_1148106_1226768	0/0	a0015	2353	3	3	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0016	2353	3	2	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0017	2353	2	2	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0018	2353	2	0	2	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0019	2353	2	0	2	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0020	2353	2	0	0	2	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0021	2353	2	0	2	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0022	2353	2	0	0	0	0	2	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0023	2353	2	0	2	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0024	2353	2	0	0	2	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0025	2353	1	0	0	0	0	1	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0026	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0027	2353	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0028	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0029	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0030	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0031	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0032	2353	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0033	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0034	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0035	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0036	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0037	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0038	2353	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0039	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0040	2353	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0041	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0042	2353	1	0	0	0	0	1	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0043	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0044	2353	1	0	0	0	0	1	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0045	2364	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0046	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0047	2353	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0048	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0049	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0050	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0051	2353	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0052	2353	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0053	2353	1	0	0	0	1	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0054	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0055	2353	1	0	0	0	0	1	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0056	2353	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0057	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0058	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0059	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0060	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0061	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0062	2353	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0063	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0064	2349	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768