JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CACNA1H_chr16_1148106_1226768	0/0	a0065	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0066	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0067	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0068	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0069	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0070	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0071	2353	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0072	2353	1	0	0	0	0	1	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0073	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0074	2353	1	0	0	0	0	1	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0075	2353	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0076	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0077	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0078	2353	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0079	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0080	2353	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1I_chr22_39565753_39694735	0/0	a0001	2223	109	35	18	37	5	14	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	1/1	a0002	2223	42	18	11	0	3	8	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0003	2223	19	15	4	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0004	2223	19	2	9	2	3	3	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0005	2223	8	8	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0006	1851	7	1	4	0	0	2	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0007	2223	5	0	0	0	3	2	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0008	2223	5	0	5	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0009	2223	3	3	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0010	1851	3	0	2	0	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0011	2223	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0012	2223	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0013	2223	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0014	2223	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0015	1851	1	0	0	1	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0016	2223	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0017	2223	1	0	0	1	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0018	2223	1	0	0	0	1	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0019	2223	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0020	2223	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0021	2223	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0022	2223	1	0	0	0	1	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0023	2223	1	0	0	1	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	a0024	2223	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1S_chr1_201034512_201117426	1/0	a0001	1873	182	31	43	85	3	19	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0002	1873	36	20	4	10	0	2	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/1	a0003	1873	22	0	4	5	4	8	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0004	1873	14	2	9	0	2	1	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0005	1873	11	11	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0006	1873	5	2	0	1	1	1	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0007	1873	3	1	2	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0008	1873	3	3	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0009	1873	3	3	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0010	1873	3	3	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426