JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CACNA1S_chr1_201034512_201117426	0/0	a0011	1873	2	0	0	0	2	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0012	1873	2	0	2	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0013	1873	2	0	2	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0014	1873	2	2	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0015	1873	2	0	0	0	0	2	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0016	1873	2	2	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0017	1873	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0018	1873	1	0	0	1	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0019	1873	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0020	1873	1	0	0	0	1	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0021	1873	1	0	0	0	1	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0022	1873	1	0	0	1	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0023	1873	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0024	1873	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0025	1873	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0026	1873	1	0	0	1	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0027	1873	1	0	0	0	0	1	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0028	1873	1	0	0	1	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0029	1873	1	0	1	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0030	1873	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0031	1873	1	0	0	1	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0032	1873	1	0	0	1	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0033	1873	1	0	1	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0034	1873	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0035	1873	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	a0036	16	1	0	0	1	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA2D1_chr7_81941444_82448777	1/1	a0001	1091	143	60	33	32	2	14	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	a0002	1091	1	0	1	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D2_chr3_50357613_50508634	1/1	a0001	1143	209	54	41	82	6	24	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	a0002	1143	16	14	2	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	a0003	1143	5	4	1	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	a0004	1143	2	2	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	a0005	1143	1	0	0	1	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	a0006	1143	1	0	0	1	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D3_chr3_54117552_55079557	1/1	a0001	1091	117	66	23	14	6	6	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	a0002	1091	1	0	1	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D4_chr12_1786963_1923652	0/1	a0001	1137	275	73	46	119	7	29	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	1/0	a0002	1137	14	0	8	0	2	3	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0003	1137	4	1	0	3	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0004	1137	3	2	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0005	1137	3	3	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0006	1137	3	3	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0007	1137	2	0	0	0	2	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0008	1137	2	0	2	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0009	1137	1	0	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0010	1137	1	0	0	0	1	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0011	1137	1	0	0	1	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0012	1137	1	0	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0013	1137	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0014	1137	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652