Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACOD1_chr13_76943511_76963638	0/0	a0006	481	1	0	0	0	0	1	copy fasta	ACOD1	chr13	76943511	76963638
ACOD1_chr13_76943511_76963638	0/0	a0007	481	1	1	0	0	0	0	copy fasta	ACOD1	chr13	76943511	76963638
ACOT11_chr1_54543228_54615329	1/1	a0001	594	201	14	52	92	12	29	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	a0002	594	82	53	10	8	0	11	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	a0003	594	37	4	3	28	0	2	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	a0004	594	32	0	2	30	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	a0005	594	20	11	3	6	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	a0006	594	5	0	3	0	1	1	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	a0007	594	3	0	3	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	a0008	594	2	0	0	2	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	a0009	594	1	0	0	0	1	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	a0010	594	1	0	0	1	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	a0011	594	1	1	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	a0012	594	1	0	0	1	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	a0013	439	1	1	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	a0014	594	1	0	0	0	0	1	copy fasta	ACOT11	chr1	54543228	54615329
ACOT12_chr5_81324996_81399134	1/1	a0001	555	240	72	51	78	11	26	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	a0002	555	30	15	10	0	1	4	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	a0003	555	5	2	1	0	0	2	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	a0004	555	1	0	1	0	0	0	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	a0005	555	1	1	0	0	0	0	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	a0006	555	1	0	1	0	0	0	copy fasta	ACOT12	chr5	81324996	81399134
ACOT13_chr6_24662077_24710046	1/1	a0001	140	399	89	78	172	18	40	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	a0002	140	3	3	0	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT1_chr14_73532143_73548796	0/0	a0001	421	85	32	25	6	5	17	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	a0002	421	10	9	0	0	0	1	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	a0003	421	6	5	1	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	a0004	421	5	4	1	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	a0005	421	2	2	0	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	a0006	191	1	1	0	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	a0007	421	1	1	0	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	a0008	421	1	1	0	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	a0009	421	1	0	0	1	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	a0010	421	1	0	0	0	0	1	copy fasta	ACOT1	chr14	73532143	73548796
ACOT2_chr14_73564213_73580655	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0001	483	254	26	39	164	5	20	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0002	483	83	44	20	9	5	5	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0003	483	42	11	13	4	4	10	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0004	483	9	0	1	5	0	3	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0005	483	6	5	1	0	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0006	483	6	5	1	0	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0007	483	4	0	1	1	0	2	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0008	483	3	0	0	3	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0009	483	2	0	0	0	0	2	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0010	483	2	0	1	0	0	1	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0011	483	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0012	37	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0013	483	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0014	483	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0015	388	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655