JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CALCA_chr11_14963501_14977351	0/0	a0007	141	1	1	0	0	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCB_chr11_15068593_15083637	1/1	a0001	127	416	98	64	194	18	40	copy fasta	CALCB	chr11	15068593	15083637
CALCOCO1_chr12_53703517_53732452	1/1	a0001	691	327	70	61	146	11	37	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	a0002	691	92	11	12	57	3	9	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	a0003	691	3	3	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	a0004	691	3	3	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	a0005	691	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	a0006	691	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	a0007	691	1	0	1	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO2_chr17_48826035_48870245	0/0	a0001	446	103	30	29	34	4	6	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	a0002	446	87	3	12	63	1	8	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	1/1	a0003	446	86	26	24	12	7	15	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	a0004	446	51	25	5	12	2	7	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	a0005	436	1	0	0	1	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCRL_chr2_187336964_187453252	1/1	a0001	461	324	79	62	139	12	30	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	a0002	461	12	12	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	a0003	461	6	0	2	4	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	a0004	461	1	1	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	a0005	461	1	0	0	1	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCR_chr7_93419486_93579724	0/0	a0001	474	187	48	13	111	1	14	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	1/1	a0002	474	102	35	27	15	9	14	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	a0003	474	2	0	0	0	0	2	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	a0004	474	1	1	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALD1_chr7_134774634_134975729	0/0	a0001	793	134	33	21	56	4	20	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	1/1	a0002	793	115	38	27	23	6	19	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	a0003	793	3	3	0	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	a0004	793	3	0	1	0	0	2	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	a0005	793	2	0	1	0	0	1	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	a0006	793	2	0	0	2	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	a0007	793	1	0	0	1	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	a0008	793	1	0	1	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	a0009	793	1	0	1	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALHM1_chr10_103448240_103463900	0/1	a0001	346	382	79	62	184	9	47	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	1/0	a0002	346	44	1	18	15	7	2	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	a0003	346	8	0	0	8	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	a0004	346	8	0	0	8	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	a0005	346	7	7	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	a0006	346	4	4	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	a0007	346	2	0	0	0	2	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	a0008	346	1	0	0	1	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	a0009	346	1	0	0	0	0	1	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	a0010	346	1	1	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	a0011	346	1	0	0	1	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	a0012	346	1	1	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	a0013	346	1	1	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	a0014	346	1	0	0	1	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM2_chr10_103441786_103457370	1/1	a0001	323	451	93	75	214	18	49	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	a0002	323	3	0	0	3	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	a0003	1	1	0	1	0	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	a0004	323	1	0	0	1	0	0	copy fasta	CALHM2	chr10	103441786	103457370