JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CALHM2_chr10_103441786_103457370	0/0	a0005	301	1	0	0	0	0	1	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	a0006	323	1	1	0	0	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM3_chr10_103467804_103484240	0/1	a0001	344	323	47	58	165	11	41	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	a0002	350	61	30	2	28	0	1	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	1/0	a0003	344	51	16	15	10	7	2	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	a0004	350	6	4	2	0	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	a0005	344	6	0	0	6	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	a0006	344	1	0	1	0	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	a0007	350	1	1	0	0	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	a0008	344	1	0	0	1	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM4_chr6_116548751_116566127	1/1	a0001	314	374	84	60	172	18	38	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	a0002	314	28	8	8	11	0	1	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	a0003	314	3	0	0	0	0	3	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	a0004	314	2	0	0	2	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	a0005	314	1	0	0	1	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM5_chr6_116506639_116529788	1/1	a0001	309	394	87	65	178	18	44	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	a0002	309	3	0	0	3	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	a0003	309	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	a0004	309	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	a0005	309	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	a0006	309	1	0	1	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	a0007	309	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM6_chr6_116456375_116468771	0/0	a0001	315	139	7	15	92	6	19	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	a0002	315	133	12	30	77	6	8	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	1/0	a0003	315	94	52	11	17	5	8	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	a0004	315	27	7	8	10	0	2	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/1	a0005	315	16	0	2	4	0	9	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	a0006	315	10	9	0	0	1	0	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	a0007	315	6	6	0	0	0	0	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	a0008	315	5	0	4	0	0	1	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	a0009	74	4	0	0	4	0	0	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	a0010	315	2	0	0	2	0	0	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	a0011	315	1	0	0	1	0	0	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	a0012	315	1	1	0	0	0	0	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	a0013	315	1	0	0	0	0	1	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	a0014	315	1	0	0	1	0	0	copy fasta	CALHM6	chr6	116456375	116468771
CALM1_chr14_90392029_90413268	1/1	a0001	149	407	96	82	171	12	44	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	a0002	148	1	0	0	1	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM2_chr2_47155084_47181511	1/1	a0001	149	432	96	74	200	14	46	copy fasta	CALM2	chr2	47155084	47181511
CALM3_chr19_46596330_46615782	1/1	a0001	149	421	92	80	187	18	42	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	a0002	149	1	0	0	1	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALML3_chr10_5519961_5531771	1/1	a0001	149	443	91	82	202	18	48	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	a0002	149	8	3	0	5	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	a0003	149	1	0	0	1	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML4_chr15_68185705_68210332	1/1	a0001	153	376	95	70	153	14	42	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	a0002	153	9	0	0	9	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	a0003	153	1	1	0	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML5_chr10_5493697_5504570	1/1	a0001	146	280	44	47	146	10	31	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	a0002	146	111	41	18	36	6	10	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	a0003	146	45	5	7	26	2	5	copy fasta	CALML5	chr10	5493697	5504570