JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CALML5_chr10_5493697_5504570	0/0	a0004	146	5	1	2	2	0	0	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	a0005	146	2	2	0	0	0	0	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	a0006	146	1	1	0	0	0	0	copy fasta	CALML5	chr10	5493697	5504570
CALML6_chr1_1910260_1922296	1/1	a0001	181	308	50	70	136	16	34	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	a0002	181	70	35	8	19	0	8	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	a0003	181	6	0	0	6	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	a0004	181	3	3	0	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	a0005	181	2	2	0	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	a0006	181	2	0	0	0	0	2	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	a0007	181	1	1	0	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	a0008	181	1	0	0	1	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	a0009	181	1	1	0	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALN1_chr7_71774491_72417338	0/0	a0001	261	142	58	34	32	6	12	copy fasta	CALN1	chr7	71774491	72417338
CALR3_chr19_16474061_16501167	1/1	a0001	384	342	76	61	155	14	34	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	a0002	384	18	4	12	2	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	a0003	384	3	3	0	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	a0004	384	2	2	0	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	a0005	384	1	0	1	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	a0006	169	1	0	0	1	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	a0007	384	1	1	0	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	a0008	384	1	1	0	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	a0009	384	1	1	0	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR_chr19_12933609_12949489	1/1	a0001	417	345	97	73	121	16	36	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	a0002	417	3	0	0	3	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	a0003	417	1	0	1	0	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	a0004	417	1	1	0	0	0	0	copy fasta	CALR	chr19	12933609	12949489
CALU_chr7_128734359_128778400	1/1	a0001	315	275	68	72	93	11	29	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	a0002	315	62	16	10	26	3	7	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	a0003	315	1	0	0	1	0	0	copy fasta	CALU	chr7	128734359	128778400
CALY_chr10_133319072_133341896	1/1	a0001	217	231	71	46	68	14	30	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	a0002	217	19	17	0	2	0	0	copy fasta	CALY	chr10	133319072	133341896
CAMK1D_chr10_12344547_12840545	0/0	a0001	385	214	70	40	70	6	28	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1G_chr1_209578714_209618939	1/1	a0001	476	364	64	61	179	15	43	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	a0002	476	80	34	18	24	3	1	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	a0003	476	1	0	1	0	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	a0004	33	1	0	0	1	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1_chr3_9752347_9774947	1/1	a0001	370	423	96	74	198	15	38	copy fasta	CAMK1	chr3	9752347	9774947
CAMK1_chr3_9752347_9774947	0/0	a0002	370	2	0	0	2	0	0	copy fasta	CAMK1	chr3	9752347	9774947
CAMK1_chr3_9752347_9774947	0/0	a0003	370	1	0	0	0	1	0	copy fasta	CAMK1	chr3	9752347	9774947
CAMK2A_chr5_150214491_150294773	1/1	a0001	489	337	96	57	138	12	32	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	a0002	37	1	0	1	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2B_chr7_44212154_44330594	1/1	a0001	666	210	55	45	61	13	34	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	a0002	666	29	11	4	9	1	4	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	a0003	666	1	0	0	1	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	a0004	666	1	0	0	1	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	a0005	22	1	0	1	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2D_chr4_113446032_113766738	1/1	a0001	533	273	90	38	118	2	23	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	a0002	533	4	0	0	4	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	a0003	533	1	0	0	0	0	1	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2G_chr10_73807501_73879555	1/1	a0001	588	278	70	37	131	8	30	copy fasta	CAMK2G	chr10	73807501	73879555