JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CAMSAP2_chr1_200733893_200865704	0/0	a0005	1478	1	1	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	a0006	1478	1	0	0	1	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	a0007	1478	1	0	1	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	a0008	1478	1	1	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP3_chr19_7590863_7623304	1/1	a0001	1249	343	86	70	131	14	40	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	a0002	1249	5	0	0	5	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	a0003	1249	3	3	0	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	a0004	1249	1	0	0	1	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	a0005	1249	1	0	0	1	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	a0006	1249	1	0	1	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	a0007	1249	1	1	0	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	a0008	1249	1	0	1	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	a0009	1249	1	0	0	1	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	a0010	1249	1	0	0	1	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMTA1_chr1_6780454_7774706	0/0	a0001	1673	49	33	6	7	0	3	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	a0002	1673	3	0	1	1	1	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	a0003	1673	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	a0004	1673	1	0	0	0	0	1	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	a0005	1673	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	a0006	1673	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	a0007	1673	1	0	1	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	a0008	1673	1	0	0	0	1	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA2_chr17_4962997_4992675	0/1	a0001	1202	210	59	39	84	10	17	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	1/0	a0002	1202	110	3	11	70	5	20	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	a0003	1202	45	12	13	18	1	1	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	a0004	1202	3	3	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	a0005	1202	2	0	0	2	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	a0006	1202	2	2	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	a0007	1202	1	0	0	0	0	1	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	a0008	1202	1	0	0	1	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	a0009	1202	1	0	1	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	a0010	1202	1	0	0	1	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	a0011	1202	1	0	0	0	0	1	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	a0012	1202	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	a0013	1202	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	a0014	1202	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAND1_chr12_67264358_67324953	1/1	a0001	1230	325	82	49	142	12	38	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	a0002	1230	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	a0003	1230	1	0	1	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	a0004	1230	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND2_chr3_12791680_12839803	0/0	a0001	1236	59	43	9	6	0	1	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	1/0	a0002	1236	48	0	8	34	0	5	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0003	1236	42	13	10	11	2	6	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0004	1236	41	17	6	10	4	4	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0005	1236	36	0	3	25	1	7	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0006	1236	27	2	11	6	2	6	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0007	1236	21	9	1	9	1	1	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0008	1236	13	0	1	10	0	2	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0009	1236	10	0	0	10	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0010	1236	9	1	3	3	2	0	copy fasta	CAND2	chr3	12791680	12839803