JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CAND2_chr3_12791680_12839803	0/0	a0011	1236	7	0	3	0	0	4	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0012	1236	5	0	0	5	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0013	1236	5	0	2	3	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0014	1236	4	0	0	4	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0015	1236	4	0	1	3	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/1	a0016	1236	3	0	2	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0017	1236	3	3	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0018	1236	3	0	0	3	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0019	1236	2	1	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0020	1236	2	0	2	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0021	1236	2	0	0	2	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0022	1236	2	0	0	1	0	1	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0023	1236	2	0	0	2	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0024	1236	2	0	0	0	0	2	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0025	1236	2	0	2	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0026	1236	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0027	1236	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0028	1236	1	0	0	0	1	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0029	1236	1	0	0	0	1	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0030	1236	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0031	1236	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0032	1236	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0033	1236	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0034	1236	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0035	1236	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0036	1236	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0037	1236	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0038	1236	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0039	1236	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0040	1236	1	0	0	0	0	1	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0041	1236	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0042	1236	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0043	1236	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0044	1236	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0045	1236	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0046	1236	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0047	1236	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0048	1236	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	a0049	1236	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CANT1_chr17_78986716_79014764	1/1	a0001	401	388	81	66	190	16	33	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	a0002	401	5	5	0	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	a0003	401	1	0	0	0	0	1	copy fasta	CANT1	chr17	78986716	79014764
CANX_chr5_179693967_179736641	1/1	a0001	592	356	82	65	159	16	32	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	a0002	592	10	9	1	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	a0003	592	10	0	0	10	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	a0004	592	2	0	0	2	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	a0005	592	1	0	0	1	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	a0006	592	1	1	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CAP1_chr1_40035729_40077648	0/1	a0001	475	374	96	46	174	16	41	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	a0002	475	2	2	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648