JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CAP1_chr1_40035729_40077648	1/0	a0003	475	1	0	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	a0004	475	1	0	0	0	0	1	copy fasta	CAP1	chr1	40035729	40077648
CAP2_chr6_17388595_17562780	1/1	a0001	477	185	60	40	49	8	26	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	a0002	477	12	3	1	7	0	1	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	a0003	477	5	3	2	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	a0004	477	2	1	1	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	a0005	477	1	1	0	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	a0006	477	1	0	0	0	0	1	copy fasta	CAP2	chr6	17388595	17562780
CAPG_chr2_85389753_85415366	0/1	a0001	348	205	61	24	91	7	21	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	1/0	a0002	348	162	21	44	68	6	22	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	a0003	348	29	6	7	7	4	5	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	a0004	348	11	0	0	11	0	0	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	a0005	7	1	0	0	0	1	0	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	a0006	348	1	0	1	0	0	0	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	a0007	348	1	0	0	1	0	0	copy fasta	CAPG	chr2	85389753	85415366
CAPN10_chr2_240581734_240604104	0/1	a0001	672	326	86	64	130	13	32	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0002	672	52	5	13	19	1	14	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0003	672	12	0	0	12	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0004	672	7	6	1	0	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	1/0	a0005	672	3	0	2	0	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0006	672	2	2	0	0	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0007	672	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0008	672	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0009	672	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0010	672	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0011	672	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0012	672	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0013	672	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0014	672	1	1	0	0	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0015	672	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	a0016	672	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN11_chr6_44153820_44189401	0/0	a0000	0	1	0	0	1	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	1/1	a0001	739	170	18	41	84	5	20	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0002	739	81	0	2	75	0	4	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0003	739	66	40	16	1	4	5	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0004	739	64	10	13	21	6	14	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0005	191	20	13	4	0	1	2	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0006	739	16	0	0	15	1	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0007	739	11	4	0	7	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0008	739	9	8	0	0	1	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0009	739	7	0	0	7	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0010	132	4	4	0	0	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0011	739	2	0	1	0	0	1	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0012	739	2	0	0	2	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0013	739	1	1	0	0	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0014	739	1	0	0	1	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0015	739	1	1	0	0	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0016	739	1	0	0	1	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0017	739	1	0	0	1	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	a0018	191	1	1	0	0	0	0	copy fasta	CAPN11	chr6	44153820	44189401