JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CAPN11_chr6_44153820_44189401	0/0	a0019	739	1	0	1	0	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN12_chr19_38725192_38749474	1/1	a0001	719	248	68	36	110	11	21	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0002	719	24	7	11	0	2	4	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0003	719	22	3	6	4	3	6	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0004	513	13	2	0	7	0	4	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0005	719	8	0	1	7	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0006	719	6	5	1	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0007	719	2	0	0	2	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0008	719	1	1	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0009	719	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0010	719	1	1	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0011	719	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0012	719	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0013	719	1	1	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0014	719	1	0	1	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0015	719	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0016	523	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0017	719	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0018	553	1	1	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0019	719	1	0	1	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0020	631	1	0	0	0	0	1	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0021	719	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0022	513	1	0	1	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0023	719	1	0	1	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0024	513	1	0	1	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0025	513	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	a0026	719	1	1	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN13_chr2_30717771_30812446	0/1	a0001	669	260	83	42	98	11	25	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	1/0	a0002	669	60	4	13	31	1	10	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0003	669	31	0	4	23	1	3	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0004	669	11	0	1	10	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0005	669	8	0	4	0	3	1	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0006	669	3	0	0	3	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0007	669	2	2	0	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0008	669	1	0	0	0	0	1	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0009	669	1	0	1	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0010	669	1	0	0	1	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0011	669	1	0	0	1	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0012	669	1	1	0	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0013	669	1	1	0	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0014	669	1	0	1	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0015	669	1	0	0	1	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	a0016	669	1	1	0	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN14_chr2_31168056_31222515	1/1	a0001	684	145	23	35	63	6	16	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0002	684	72	18	19	24	3	8	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0003	684	17	16	1	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0004	684	16	11	5	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0005	684	13	0	3	6	2	2	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0006	684	9	1	1	4	1	2	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0007	684	7	4	0	3	0	0	copy fasta	CAPN14	chr2	31168056	31222515