Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACOT2_chr14_73564213_73580655	0/0	a0016	483	1	0	0	0	0	1	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0017	246	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0018	483	1	1	0	0	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	a0019	483	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT4_chr14_73586873_73600766	0/0	a0001	421	190	12	42	111	5	20	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	1/1	a0002	421	183	71	29	63	5	13	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	a0003	421	14	0	5	1	4	4	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	a0004	421	10	0	2	5	0	3	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	a0005	421	7	0	0	7	0	0	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	a0006	421	2	2	0	0	0	0	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	a0007	421	1	1	0	0	0	0	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	a0008	421	1	0	0	1	0	0	copy fasta	ACOT4	chr14	73586873	73600766
ACOT6_chr14_73607517_73624888	0/0	a0001	421	199	22	34	117	5	21	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	a0002	421	84	26	8	46	1	3	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	1/1	a0003	421	79	17	23	20	4	13	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	a0004	421	11	10	1	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	a0005	421	5	5	0	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	a0006	421	4	0	1	1	0	2	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	a0007	421	3	3	0	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	a0008	421	3	3	0	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	a0009	421	1	0	1	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	a0010	421	1	0	0	1	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	a0011	421	1	1	0	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	a0012	421	1	0	0	0	0	1	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	a0013	421	1	0	0	1	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	a0014	421	1	1	0	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT7_chr1_6259272_6398767	1/1	a0001	370	239	95	40	74	4	24	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	a0002	370	1	1	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT8_chr20_45836721_45862392	1/1	a0001	319	414	90	71	193	16	42	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	a0002	319	3	3	0	0	0	0	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	a0003	319	2	1	1	0	0	0	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	a0004	319	1	0	0	1	0	0	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	a0005	319	1	1	0	0	0	0	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	a0006	319	1	1	0	0	0	0	copy fasta	ACOT8	chr20	45836721	45862392
ACOT9_chrX_23696055_23748276	1/1	a0001	448	298	75	55	124	13	29	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	a0002	448	4	2	2	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	a0003	448	2	1	1	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	a0004	282	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	a0005	329	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	a0006	257	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	a0007	55	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	a0008	448	1	0	0	0	0	1	copy fasta	ACOT9	chrX	23696055	23748276
ACOX1_chr17_75936507_75984166	1/0	a0001	660	173	67	25	60	7	13	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/1	a0002	660	155	17	34	73	9	21	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	a0003	660	10	9	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	a0004	660	1	0	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	a0005	660	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	a0006	660	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	a0007	660	1	0	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	a0008	660	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166