JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CAPN14_chr2_31168056_31222515	0/0	a0008	684	7	0	0	6	0	1	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0009	684	6	6	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0010	684	5	5	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0011	683	4	0	0	4	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0012	684	3	3	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0013	684	2	0	0	2	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0014	684	2	0	2	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0015	684	2	1	1	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0016	684	2	0	2	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0017	684	2	2	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0018	684	2	1	1	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0019	684	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0020	684	1	0	0	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0021	684	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0022	684	1	0	0	0	0	1	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0023	684	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0024	684	1	0	0	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0025	684	1	0	0	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0026	684	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0027	684	1	0	0	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	a0028	684	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN15_chr16_522712_559636	1/1	a0001	1086	341	67	70	152	15	35	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0002	1086	16	9	1	6	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0003	872	11	1	4	5	0	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0004	1086	9	7	2	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0005	872	7	2	3	2	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0006	1086	2	0	0	0	0	2	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0007	1086	2	2	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0008	1086	2	2	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0009	1086	2	2	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0010	1086	1	0	0	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0011	1086	1	0	0	0	0	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0012	1086	1	1	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0013	1086	1	0	0	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0014	1086	1	1	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0015	872	1	1	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0016	872	1	0	1	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0017	872	1	0	0	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0018	1086	1	0	0	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0019	1086	1	0	0	0	0	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0020	1055	1	0	1	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0021	1086	1	0	0	0	1	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0022	1086	1	1	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0023	1086	1	1	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0024	872	1	0	0	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0025	872	1	1	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0026	872	1	0	0	0	0	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	a0027	1086	1	0	0	0	0	1	copy fasta	CAPN15	chr16	522712	559636
CAPN1_chr11_65176928_65217006	1/0	a0001	714	343	91	58	141	10	42	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/1	a0002	714	41	1	2	31	4	2	copy fasta	CAPN1	chr11	65176928	65217006