JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CAPN1_chr11_65176928_65217006	0/0	a0003	714	2	2	0	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	a0004	714	2	0	2	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	a0005	714	2	0	2	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	a0006	714	1	0	0	1	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	a0007	714	1	0	0	1	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	a0008	714	1	0	0	1	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	a0009	714	1	0	0	1	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN2_chr1_223707539_223781018	0/1	a0001	700	269	71	51	114	7	25	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0002	700	47	2	14	23	4	4	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0003	700	13	0	0	11	0	2	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0004	700	11	0	0	11	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0005	700	11	11	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	1/0	a0006	700	6	5	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0007	700	4	4	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0008	700	3	2	1	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0009	700	3	0	0	3	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0010	700	2	0	0	2	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0011	700	1	0	0	1	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0012	700	1	0	1	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0013	700	1	0	0	0	0	1	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0014	700	1	0	0	0	0	1	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0015	700	1	1	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0016	700	1	0	0	0	0	1	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0017	700	1	0	0	1	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0018	106	1	0	0	0	1	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	a0019	700	1	0	1	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN3_chr15_42354501_42417317	1/1	a0001	821	191	15	40	98	9	27	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0002	821	87	56	12	12	1	6	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0003	821	6	6	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0004	821	4	4	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0005	821	4	4	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0006	821	3	3	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0007	821	2	2	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0008	821	1	1	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0009	821	1	1	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0010	821	1	1	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0011	821	1	0	0	1	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0012	821	1	0	1	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0013	821	1	0	0	0	0	1	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0014	821	1	1	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0015	821	1	0	0	1	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	a0016	821	1	0	1	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN5_chr11_77061971_77131155	1/1	a0001	640	355	78	71	151	12	41	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	a0002	640	9	8	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	a0003	640	5	5	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	a0004	640	3	0	0	3	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	a0005	640	2	1	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	a0006	640	1	0	0	0	0	1	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	a0007	640	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	a0008	640	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155