JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CAPN5_chr11_77061971_77131155	0/0	a0009	640	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	a0010	640	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	a0011	640	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	a0012	640	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	a0013	640	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN6_chrX_111240099_111275483	1/1	a0001	641	186	30	33	94	7	20	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	a0002	641	50	47	3	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	a0003	641	2	2	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	a0004	104	1	0	0	1	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	a0005	641	1	0	1	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	a0006	641	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	a0007	641	1	0	0	1	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN7_chr3_15201246_15257916	1/1	a0001	813	358	88	55	165	12	36	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	a0002	813	10	0	3	5	0	2	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	a0003	813	6	6	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	a0004	813	1	0	1	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	a0005	813	1	0	1	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN9_chr1_230742388_230806989	1/1	a0001	690	236	24	51	131	7	21	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0002	690	49	15	9	15	3	7	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0003	690	38	14	6	6	2	10	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0004	690	15	7	2	3	0	3	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0005	690	13	0	0	11	0	2	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0006	690	12	11	1	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0007	690	6	5	1	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0008	690	6	6	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0009	690	2	1	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0010	690	2	1	0	0	0	1	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0011	690	2	0	1	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0012	690	2	2	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0013	690	1	0	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0014	109	1	0	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0015	690	1	1	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0016	690	1	1	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0017	690	1	1	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0018	690	1	0	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0019	690	1	0	0	0	0	1	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0020	690	1	0	1	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0021	690	1	0	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0022	690	1	1	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	a0023	690	1	0	0	0	0	1	copy fasta	CAPN9	chr1	230742388	230806989
CAPNS1_chr19_36135066_36155353	1/1	a0001	268	470	92	80	230	18	48	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	a0002	269	4	1	1	1	0	1	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	a0003	264	3	2	0	1	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	a0004	269	1	0	1	0	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	a0005	274	1	1	0	0	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	a0006	268	1	0	0	0	0	1	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS2_chr16_55561684_55572687	1/1	a0001	248	407	84	65	200	14	42	copy fasta	CAPNS2	chr16	55561684	55572687
CAPNS2_chr16_55561684_55572687	0/0	a0002	248	4	4	0	0	0	0	copy fasta	CAPNS2	chr16	55561684	55572687
CAPNS2_chr16_55561684_55572687	0/0	a0003	248	1	0	1	0	0	0	copy fasta	CAPNS2	chr16	55561684	55572687
CAPRIN1_chr11_34046731_34107610	1/1	a0001	709	244	89	48	69	6	30	copy fasta	CAPRIN1	chr11	34046731	34107610