JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CAPRIN1_chr11_34046731_34107610	0/0	a0002	709	1	0	0	1	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	a0003	709	1	1	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN2_chr12_30704553_30759951	1/0	a0001	1045	155	13	27	98	3	13	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	a0002	1045	118	71	16	11	2	18	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	a0003	1045	90	6	13	63	3	5	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/1	a0004	1045	5	0	2	0	0	2	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	a0005	1045	4	0	3	0	0	1	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	a0006	1045	2	2	0	0	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	a0007	1045	1	0	0	0	0	1	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	a0008	1045	1	0	1	0	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	a0009	1045	1	0	0	1	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	a0010	115	1	0	0	1	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPS2_chr12_75270979_75335324	1/1	a0001	557	289	69	53	118	10	37	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	a0002	557	70	12	15	36	5	2	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	a0003	557	2	0	0	0	0	2	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	a0004	557	2	1	1	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	a0005	557	2	0	0	2	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	a0006	557	2	0	0	0	0	2	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	a0007	557	1	0	0	0	0	1	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	a0008	557	1	0	1	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	a0009	557	1	0	0	0	1	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPSL_chr5_35899288_35943622	0/0	a0001	208	229	25	33	132	9	30	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	1/1	a0002	208	168	61	36	46	9	14	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	a0003	208	4	4	0	0	0	0	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	a0004	208	1	0	1	0	0	0	copy fasta	CAPSL	chr5	35899288	35943622
CAPS_chr19_5909254_5921211	1/1	a0001	189	362	72	65	167	12	44	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	a0002	189	21	11	3	3	0	4	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	a0003	189	7	6	1	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	a0004	189	3	3	0	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	a0005	189	2	2	0	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	a0006	189	1	0	1	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPZA1_chr1_112614832_112676616	1/1	a0001	286	363	83	70	172	16	20	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	a0002	286	2	0	0	2	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	a0003	286	2	0	2	0	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	a0004	286	1	1	0	0	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA2_chr7_116857587_116927049	1/1	a0001	286	354	90	60	154	12	36	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA3_chr12_18733119_18744188	1/1	a0001	299	387	96	62	172	18	37	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	a0002	299	2	0	2	0	0	0	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	a0003	299	1	0	0	1	0	0	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	a0004	299	1	0	0	1	0	0	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	a0005	299	1	0	0	0	0	1	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZB_chr1_19333775_19490539	1/1	a0001	272	363	88	62	160	15	36	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	a0002	272	1	0	0	0	1	0	copy fasta	CAPZB	chr1	19333775	19490539
CARD10_chr22_37485362_37524415	0/1	a0001	1030	98	38	14	39	1	5	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	1/0	a0002	1032	89	21	17	30	6	14	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0003	1032	64	18	9	25	3	9	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0004	1034	4	1	1	0	0	2	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0005	1030	3	0	3	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0006	1030	3	3	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0007	1032	2	0	0	2	0	0	copy fasta	CARD10	chr22	37485362	37524415