JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CARD10_chr22_37485362_37524415	0/0	a0008	1032	2	2	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0009	1032	2	0	0	2	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0010	1034	1	1	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0011	1032	1	0	0	0	0	1	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0012	1032	1	0	0	0	0	1	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0013	1032	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0014	1032	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0015	1032	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0016	1032	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0017	1030	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	a0018	1028	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD11_chr7_2901142_3048867	1/0	a0001	1154	298	84	61	99	18	35	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0002	1154	3	3	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0003	1154	3	0	0	3	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0004	1154	2	0	0	2	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0005	1154	2	2	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/1	a0006	1154	2	0	0	1	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0007	1154	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0008	1154	1	0	0	0	0	1	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0009	1154	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0010	1154	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0011	1154	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0012	1154	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0013	1154	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0014	1154	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0015	1154	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0016	1154	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0017	1154	1	0	0	1	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	a0018	1154	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD14_chr17_80165030_80214331	1/0	a0001	1004	124	35	25	44	3	16	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0002	1004	60	6	7	38	3	6	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0003	1004	49	17	10	12	3	7	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0004	1004	41	7	15	12	3	4	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/1	a0005	1004	30	5	9	13	2	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0006	1004	19	0	0	17	0	2	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0007	1004	13	13	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0008	1004	5	0	1	0	4	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0009	1004	3	0	0	3	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0010	1004	3	3	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0011	1004	3	0	0	0	0	3	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0012	1004	3	0	0	1	0	2	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0013	1004	2	0	1	0	0	1	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0014	1004	2	0	0	2	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0015	1004	2	0	0	2	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0016	1004	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0017	1004	1	0	1	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0018	1004	1	0	1	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0019	1004	1	0	0	0	0	1	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0020	1004	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0021	1004	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331