JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CARD14_chr17_80165030_80214331	0/0	a0022	1004	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0023	1004	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0024	1004	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0025	1004	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0026	1004	1	0	1	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0027	1004	1	0	0	1	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0028	1004	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0029	1004	1	0	1	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0030	1004	1	0	0	1	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0031	1004	1	0	0	1	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	a0032	1004	1	0	0	1	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD16_chr11_105036563_105050335	1/1	a0001	97	444	91	82	210	15	44	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	a0002	97	1	1	0	0	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	a0003	97	1	1	0	0	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	a0004	97	1	0	0	1	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	a0005	97	1	1	0	0	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	a0006	97	1	1	0	0	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	a0007	97	1	0	0	0	1	0	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	a0008	97	1	0	0	1	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	a0009	97	1	1	0	0	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD18_chr11_105132714_105144769	1/1	a0001	90	428	94	82	194	14	42	copy fasta	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	a0002	41	2	0	0	0	0	2	copy fasta	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	a0003	90	2	2	0	0	0	0	copy fasta	CARD18	chr11	105132714	105144769
CARD19_chr9_93091217_93118283	1/1	a0001	183	336	88	63	145	10	28	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	a0002	183	18	1	5	0	2	10	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	a0003	183	1	0	0	0	0	1	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	a0004	183	1	0	0	0	0	1	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	a0005	183	1	1	0	0	0	0	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	a0006	113	1	0	0	1	0	0	copy fasta	CARD19	chr9	93091217	93118283
CARD6_chr5_40836367_40860354	1/1	a0001	1037	378	74	67	181	16	38	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0002	1037	12	0	0	12	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0003	1037	7	1	2	0	1	3	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0004	1037	6	6	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0005	39	5	0	5	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0006	1037	4	4	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0007	1037	3	2	1	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0008	1037	3	0	2	0	0	1	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0009	1037	3	0	1	2	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0010	1037	3	2	1	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0011	1037	2	2	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0012	1037	2	0	0	0	0	2	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0013	1037	2	2	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0014	1037	2	0	2	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0015	1037	2	2	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0016	1037	1	0	0	0	1	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0017	1037	1	1	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0018	1037	1	0	1	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0019	1037	1	0	0	1	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0020	1037	1	1	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	a0021	1037	1	1	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354