JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CARD8_chr19_48203086_48260912	1/0	a0001	537	204	59	44	75	4	21	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/1	a0002	537	109	14	15	57	7	15	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	a0003	172	19	0	2	13	0	4	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	a0004	537	14	11	3	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	a0005	537	3	0	0	3	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	a0006	537	3	3	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	a0007	537	2	2	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	a0008	537	2	0	1	0	1	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	a0009	125	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	a0010	537	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	a0011	537	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	a0012	537	1	0	1	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	a0013	537	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	a0014	537	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD9_chr9_136358956_136378669	1/0	a0001	536	242	66	40	94	10	31	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/1	a0002	536	155	27	36	68	6	17	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	a0003	536	2	0	2	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	a0004	536	2	0	0	2	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	a0005	536	1	0	0	1	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	a0006	536	1	1	0	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	a0007	536	1	0	0	1	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	a0008	536	1	1	0	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	a0009	536	1	1	0	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARF_chr2_202907275_202993263	1/1	a0001	725	285	62	51	134	6	30	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	a0002	725	23	19	4	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	a0003	725	14	1	5	4	4	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	a0004	725	8	0	0	8	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	a0005	725	3	3	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	a0006	725	1	1	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARHSP1_chr16_8847947_8874006	1/1	a0001	147	465	100	87	209	18	49	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	a0002	147	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	a0003	147	1	0	1	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	a0004	147	1	0	0	0	0	1	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	a0005	147	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	a0006	147	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARM1_chr19_10866553_10928075	1/1	a0001	608	350	80	64	153	11	40	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	a0002	609	3	1	0	1	1	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	a0003	608	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARMIL1_chr6_25274374_25625530	0/1	a0001	1371	133	41	23	44	3	21	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	1/0	a0002	1371	28	15	7	1	1	3	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	a0003	1371	9	0	1	6	1	1	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	a0004	1371	4	0	1	1	1	1	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	a0005	1371	3	2	1	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	a0006	1371	3	3	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	a0007	1371	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	a0008	1371	1	0	1	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	a0009	1371	1	0	0	1	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	a0010	1371	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	a0011	1371	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	a0012	1371	1	0	0	1	0	0	copy fasta	CARMIL1	chr6	25274374	25625530