JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CARMIL2_chr16_67640144_67662569	1/0	a0001	1435	254	76	49	88	12	28	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0002	1434	6	4	0	0	0	2	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/1	a0003	1435	4	0	1	0	2	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0004	1435	3	0	0	3	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0005	1435	3	0	0	0	0	3	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0006	1435	2	0	0	2	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0007	1435	1	0	0	1	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0008	1435	1	1	0	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0009	1435	1	0	1	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0010	1435	1	0	0	1	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0011	1435	1	0	0	1	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0012	1434	1	1	0	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0013	1435	1	0	0	0	0	1	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0014	1435	1	0	1	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0015	1435	1	0	1	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	a0016	1435	1	0	1	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL3_chr14_24047009_24074729	1/0	a0001	1372	282	38	33	174	8	28	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0002	1372	84	36	26	4	5	13	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0003	1372	6	0	3	0	2	1	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0004	1372	5	3	0	0	0	2	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/1	a0005	1372	5	0	1	0	0	3	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0006	1372	4	4	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0007	1372	3	1	1	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0008	1372	3	0	3	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0009	1372	3	3	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0010	1372	2	2	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0011	1372	2	2	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0012	1372	1	0	0	0	0	1	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0013	1372	1	0	0	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0014	1372	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0015	1372	1	0	0	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0016	1372	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0017	1372	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0018	1372	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0019	1372	1	0	0	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0020	1372	1	0	0	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0021	1372	1	0	0	0	1	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0022	1372	1	0	1	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0023	1365	1	0	0	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0024	1372	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0025	1372	1	0	1	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	a0026	1372	1	0	1	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARNMT1_chr9_74975790_75033293	1/1	a0001	409	364	80	66	159	18	39	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	a0002	409	1	0	0	1	0	0	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	a0003	409	1	0	0	0	0	1	copy fasta	CARNMT1	chr9	74975790	75033293
CARNS1_chr11_67410678_67430604	1/0	a0001	950	257	30	49	131	14	32	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0002	950	66	46	18	2	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0003	950	7	7	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0004	950	3	0	0	3	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0005	950	1	0	1	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604