JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CARNS1_chr11_67410678_67430604	0/0	a0006	950	1	0	0	0	0	1	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0007	950	1	0	1	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0008	950	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0009	950	1	0	1	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/1	a0010	950	1	0	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0011	950	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0012	950	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0013	950	1	0	0	0	0	1	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0014	950	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0015	950	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0016	950	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	a0017	950	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARS1_chr11_2995929_3062423	0/1	a0001	831	305	87	56	103	18	40	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	a0002	831	6	5	1	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	a0003	831	2	0	0	2	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	a0004	831	1	0	1	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	a0005	831	1	1	0	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	a0006	831	1	0	0	1	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	a0007	831	1	0	0	1	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	a0008	831	1	1	0	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	a0009	831	1	1	0	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	a0010	831	1	1	0	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	a0011	831	1	0	0	1	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS2_chr13_110636417_110711116	1/1	a0001	564	282	73	52	116	10	29	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0002	564	43	6	11	19	2	5	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0003	564	26	3	9	12	2	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0004	564	3	3	0	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0005	564	3	0	0	0	0	3	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0006	564	2	2	0	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0007	564	2	2	0	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0008	564	2	0	0	2	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0009	564	1	0	0	1	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0010	564	1	0	1	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0011	564	1	1	0	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0012	564	1	0	0	1	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0013	564	1	0	1	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0014	564	1	0	0	0	0	1	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0015	564	1	0	0	1	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0016	564	1	0	0	1	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	a0017	564	1	0	0	1	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARTPT_chr5_71714275_71726045	1/0	a0001	116	472	96	84	226	16	49	copy fasta	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	a0002	116	1	0	0	0	0	1	copy fasta	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/1	a0003	116	1	0	0	0	0	0	copy fasta	CARTPT	chr5	71714275	71726045
CASC3_chr17_40135537_40177171	1/1	a0001	703	262	83	54	83	12	28	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	a0002	703	1	0	0	1	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	a0003	703	1	0	0	1	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	a0004	703	1	1	0	0	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	a0005	703	1	0	0	1	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASD1_chr7_94504809_94562019	1/0	a0001	797	382	77	68	187	10	39	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	a0002	797	13	0	0	13	0	0	copy fasta	CASD1	chr7	94504809	94562019