JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CASD1_chr7_94504809_94562019	0/0	a0003	797	1	0	0	0	0	1	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	a0004	797	1	1	0	0	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/1	a0005	797	1	0	0	0	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASKIN1_chr16_2172180_2201605	1/1	a0001	1431	291	61	57	122	12	37	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0002	1432	15	12	2	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0003	1431	4	0	0	1	1	2	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0004	1431	4	4	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0005	1432	3	3	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0006	1433	3	0	0	3	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0007	1431	3	2	1	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0008	1431	2	0	0	2	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0009	1427	2	0	0	2	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0010	1431	2	0	0	0	2	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0011	1431	1	0	1	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0012	1431	1	0	1	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0013	1431	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0014	528	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0015	1431	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0016	1431	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0017	1431	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0018	1433	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0019	1432	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0020	1433	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0021	1432	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0022	1431	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0023	1431	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0024	1431	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0025	1431	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0026	1431	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0027	1431	1	0	0	0	1	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0028	1431	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0029	1431	1	0	1	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0030	1431	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	a0031	1431	1	0	1	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN2_chr17_75495261_75520537	0/1	a0001	1202	283	86	54	86	17	39	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	1/0	a0002	1202	108	2	26	72	1	6	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0003	1202	3	0	0	3	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0004	1202	2	0	2	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0005	1202	2	1	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0006	1202	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0007	1202	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0008	1202	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0009	1202	1	0	1	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0010	1202	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0011	1202	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0012	1202	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0013	1202	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0014	1202	1	0	1	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0015	1202	1	0	0	0	0	1	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0016	1202	1	0	0	0	0	1	copy fasta	CASKIN2	chr17	75495261	75520537