JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CASKIN2_chr17_75495261_75520537	0/0	a0017	1202	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0018	1212	1	0	0	0	0	1	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0019	1202	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0020	1202	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	a0021	1202	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASK_chrX_41509934_41928554	1/1	a0001	926	162	32	29	70	9	20	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	a0002	926	1	0	0	1	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	a0003	383	1	0	0	1	0	0	copy fasta	CASK	chrX	41509934	41928554
CASP10_chr2_201178141_201226665	1/0	a0001	522	218	63	40	82	3	29	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/1	a0002	522	91	24	24	27	6	9	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	a0003	522	6	0	3	0	2	1	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	a0004	522	1	0	0	0	0	1	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	a0005	522	1	0	1	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	a0006	522	1	0	0	0	1	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	a0007	522	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	a0008	537	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	a0009	522	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	a0010	522	1	0	0	1	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP14_chr19_15044480_15063293	1/1	a0001	242	422	96	72	188	18	46	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	a0002	242	4	0	4	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	a0003	242	1	0	0	1	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	a0004	242	1	0	0	1	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP1_chr11_105020508_105040144	1/1	a0001	404	366	81	75	158	12	38	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	a0002	404	16	8	1	5	0	2	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	a0003	404	11	0	0	11	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	a0004	404	4	4	0	0	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	a0005	404	1	1	0	0	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP2_chr7_143283351_143312696	1/1	a0001	452	235	82	49	68	12	22	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	a0002	452	10	2	5	0	1	2	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	a0003	452	1	0	0	0	1	0	copy fasta	CASP2	chr7	143283351	143312696
CASP3_chr4_184622696_184654447	1/1	a0001	277	363	93	72	136	18	42	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	a0002	277	3	3	0	0	0	0	copy fasta	CASP3	chr4	184622696	184654447
CASP4_chr11_104937866_104973574	1/1	a0001	377	340	81	66	137	12	42	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	a0002	377	11	6	5	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	a0003	377	5	4	1	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	a0004	377	1	0	0	1	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	a0005	377	1	1	0	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP5_chr11_104989243_105028168	0/0	a0001	434	148	17	17	97	2	15	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	1/0	a0002	434	77	15	25	18	3	15	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/1	a0003	434	76	20	25	22	1	7	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0004	434	42	6	8	19	4	5	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0005	434	8	5	2	0	0	1	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0006	434	7	6	1	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0007	434	6	6	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0008	434	6	5	0	0	0	1	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0009	434	6	4	2	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0010	434	2	2	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0011	434	2	0	2	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0012	434	2	1	0	0	0	1	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0013	434	2	2	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168