JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CASP5_chr11_104989243_105028168	0/0	a0014	434	2	1	1	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0015	434	1	1	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0016	434	1	1	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0017	434	1	1	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0018	434	1	0	0	1	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0019	434	1	1	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0020	434	1	0	0	1	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0021	434	1	0	1	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0022	434	1	1	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0023	434	1	1	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	a0024	39	1	0	0	0	0	1	copy fasta	CASP5	chr11	104989243	105028168
CASP6_chr4_109683628_109708445	1/1	a0001	293	404	82	75	187	16	42	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	a0002	293	7	7	0	0	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	a0003	293	2	0	0	2	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	a0004	293	2	1	1	0	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	a0005	293	1	0	0	1	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP7_chr10_113674912_113735905	1/1	a0001	303	250	68	42	99	9	30	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	a0002	303	112	14	24	62	3	9	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	a0003	303	39	10	11	14	2	2	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	a0004	303	3	1	0	1	0	1	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	a0005	309	1	1	0	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	a0006	303	1	0	1	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP8_chr2_201255536_201292709	1/1	a0001	479	368	83	59	173	5	46	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	a0002	479	13	8	3	1	1	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	a0003	479	2	0	2	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	a0004	479	1	1	0	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	a0005	479	1	1	0	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	a0006	479	1	1	0	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP9_chr1_15486401_15529215	0/0	a0001	416	212	66	40	80	6	20	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	1/1	a0002	416	133	19	28	56	10	18	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	a0003	416	2	0	2	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	a0004	416	1	1	0	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	a0005	416	1	1	0	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	a0006	416	1	1	0	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASQ1_chr1_160185575_160206886	1/1	a0001	396	425	90	81	193	14	45	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	a0002	396	5	3	2	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	a0003	396	4	4	0	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	a0004	390	1	0	0	1	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	a0005	346	1	0	0	1	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	a0006	396	1	0	0	1	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	a0007	396	1	0	0	0	0	1	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	a0008	396	1	0	1	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	a0009	396	1	1	0	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ2_chr1_115695021_115773714	1/0	a0001	399	216	49	48	86	6	26	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/1	a0002	399	119	32	10	62	4	10	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	a0003	399	21	1	4	16	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	a0004	399	5	5	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	a0005	399	2	2	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	a0006	399	1	1	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASR_chr3_122178668_122296629	0/1	a0001	1078	201	78	43	47	13	19	copy fasta	CASR	chr3	122178668	122296629