JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CASR_chr3_122178668_122296629	0/0	a0002	1078	66	1	3	51	1	10	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	1/0	a0003	1078	21	15	1	2	0	2	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	a0004	1078	17	0	6	4	2	5	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	a0005	1078	5	0	5	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	a0006	1078	2	0	0	2	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	a0007	1078	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	a0008	1078	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASS4_chr20_56407260_56465382	1/1	a0001	786	261	48	71	98	14	28	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	a0002	786	88	33	4	50	0	1	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	a0003	786	7	6	1	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	a0004	786	6	0	0	6	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	a0005	786	6	6	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	a0006	786	1	0	0	0	0	1	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	a0007	786	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	a0008	786	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	a0009	786	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	a0010	786	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	a0011	786	1	0	0	0	0	1	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	a0012	786	1	0	0	0	0	1	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	a0013	786	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASTOR1_chr22_30280117_30294505	1/1	a0001	329	423	92	79	188	18	44	copy fasta	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	a0002	329	1	0	1	0	0	0	copy fasta	CASTOR1	chr22	30280117	30294505
CASTOR2_chr7_74959705_75036528	1/1	a0001	329	226	85	49	50	8	32	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	a0002	329	2	1	1	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CAST_chr5_96657376_96779683	1/1	a0001	791	238	45	36	116	14	25	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	a0002	791	91	25	23	26	2	15	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	a0003	791	6	5	1	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	a0004	791	5	4	1	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	a0005	791	4	3	1	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	a0006	791	4	0	2	2	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	a0007	791	2	0	0	0	0	2	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	a0008	791	2	2	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	a0009	791	1	0	0	1	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	a0010	791	1	1	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	a0011	791	1	1	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	a0012	791	1	0	0	1	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	a0013	791	1	0	0	1	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	a0014	791	1	0	0	1	0	0	copy fasta	CAST	chr5	96657376	96779683
CASZ1_chr1_10631604_10801646	1/0	a0001	1759	194	57	38	64	4	30	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	a0002	1759	11	11	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	a0003	1757	11	7	1	3	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	a0004	1759	6	6	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/1	a0005	1759	2	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	a0006	1759	2	2	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	a0007	1757	1	0	0	0	1	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	a0008	1759	1	0	0	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	a0009	1757	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	a0010	1754	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	a0011	1759	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	a0012	1757	1	0	0	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646