JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CASZ1_chr1_10631604_10801646	0/0	a0013	1759	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	a0014	1759	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	a0015	1759	1	0	0	0	1	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	a0016	1759	1	0	1	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CATIP_chr2_218351857_218373094	1/1	a0001	387	356	95	72	136	14	37	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	a0002	387	4	0	0	4	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	a0003	387	1	0	0	1	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	a0004	387	1	1	0	0	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	a0005	387	1	0	0	1	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	a0006	387	1	0	0	1	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	a0007	387	1	0	0	0	0	1	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	a0008	387	1	0	0	1	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATSPER1_chr11_66011752_66031479	0/1	a0001	780	200	31	44	79	12	33	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0002	780	115	38	25	43	4	5	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	1/0	a0003	780	32	14	1	16	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0004	780	21	0	1	20	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0005	780	8	0	0	8	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0006	780	6	0	0	6	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0007	780	6	0	0	6	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0008	780	5	4	1	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0009	780	3	3	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0010	780	2	0	0	2	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0011	780	1	0	1	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0012	602	1	0	0	1	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0013	780	1	1	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0014	780	1	1	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0015	780	1	1	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0016	780	1	0	1	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0017	780	1	0	0	1	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0018	780	1	0	0	1	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0019	780	1	1	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	a0020	780	1	0	0	1	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER2_chr15_43623503_43653844	1/1	a0001	530	286	53	51	134	14	32	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	a0002	530	89	20	12	49	1	7	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	a0003	530	7	7	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	a0004	530	5	4	1	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	a0005	530	2	0	0	0	1	1	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	a0006	530	1	1	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	a0007	530	1	1	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	a0008	530	1	0	0	1	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER3_chr5_134962907_135016696	1/1	a0001	398	316	39	67	160	10	38	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	a0002	398	54	46	8	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	a0003	398	3	1	1	0	1	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	a0004	398	2	1	0	0	1	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	a0005	398	2	1	1	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	a0006	398	1	0	1	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	a0007	398	1	1	0	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	a0008	398	1	1	0	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER4_chr1_26185602_26207964	1/0	a0001	472	296	40	54	167	8	26	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	a0002	472	52	28	11	1	2	10	copy fasta	CATSPER4	chr1	26185602	26207964