JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CATSPER4_chr1_26185602_26207964	0/0	a0003	472	27	15	8	1	0	3	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/1	a0004	472	7	0	1	0	4	1	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	a0005	472	4	0	0	4	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	a0006	472	4	0	2	0	0	2	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	a0007	472	3	3	0	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	a0008	472	2	1	1	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	a0009	472	1	0	0	1	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	a0010	472	1	1	0	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	a0011	472	1	0	1	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPERB_chr14_91575698_91737086	0/1	a0001	1116	235	63	38	92	12	29	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	a0002	1116	22	1	1	19	0	1	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	a0003	1116	10	10	0	0	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	a0004	1116	1	1	0	0	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	a0005	1116	1	1	0	0	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	a0006	816	1	0	1	0	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	a0007	1116	1	0	0	1	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERD_chr19_5715637_5783734	1/0	a0001	798	98	38	32	6	8	13	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/1	a0002	798	80	1	26	37	2	13	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0003	798	55	15	6	24	2	8	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0004	798	47	1	3	40	0	3	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0005	798	7	6	1	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0006	798	5	5	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0007	798	3	0	2	1	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0008	798	3	3	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0009	798	3	0	0	0	2	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0010	798	3	2	0	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0011	798	3	3	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0012	798	2	2	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0013	798	2	0	0	2	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0014	798	2	2	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0015	798	2	2	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0016	798	2	2	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0017	798	2	2	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0018	798	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0019	798	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0020	798	1	0	0	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0021	798	1	0	0	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0022	798	1	0	1	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0023	798	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0024	798	1	0	0	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0025	798	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0026	798	1	0	0	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0027	798	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0028	798	1	0	0	1	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0029	798	1	0	0	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0030	798	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0031	798	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0032	798	1	0	0	1	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0033	798	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	a0034	798	1	0	1	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734