JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CATSPERE_chr1_244456273_244645504	1/1	a0001	951	169	57	23	62	6	19	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	a0002	951	15	13	2	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	a0003	951	6	0	0	6	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	a0004	951	4	4	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	a0005	951	3	0	0	0	2	1	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	a0006	951	2	2	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	a0007	951	2	2	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	a0008	951	1	0	1	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	a0009	951	1	1	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	a0010	951	1	0	0	1	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	a0011	951	1	1	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	a0012	951	1	0	0	1	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERG_chr19_38330830_38375943	1/1	a0001	1159	229	64	36	93	9	25	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0002	1159	64	2	20	26	1	15	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0003	1159	53	9	6	38	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0004	1159	15	0	0	15	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0005	1159	2	2	0	0	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0006	1159	2	0	0	2	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0007	1159	2	0	0	2	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0008	43	1	0	1	0	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0009	77	1	0	0	1	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0010	1159	1	0	1	0	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0011	1159	1	0	0	1	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0012	1159	1	0	0	1	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0013	1159	1	0	0	0	0	1	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0014	1159	1	0	0	0	0	1	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0015	746	1	0	0	1	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	a0016	1159	1	1	0	0	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERZ_chr11_64295358_64309770	1/1	a0001	200	351	89	64	145	9	42	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	a0002	200	28	4	8	13	3	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	a0003	200	6	1	0	5	0	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	a0004	200	4	0	3	0	1	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	a0005	200	1	0	1	0	0	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	a0006	200	1	0	0	1	0	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	a0007	200	1	0	0	0	1	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CAT_chr11_34433934_34477060	1/1	a0001	527	421	86	76	205	16	36	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	a0002	527	1	0	0	1	0	0	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	a0003	527	1	1	0	0	0	0	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	a0004	527	1	1	0	0	0	0	copy fasta	CAT	chr11	34433934	34477060
CAV1_chr7_116520036_116566179	1/1	a0001	178	342	82	70	132	16	40	copy fasta	CAV1	chr7	116520036	116566179
CAV2_chr7_116494738_116513541	1/0	a0001	162	320	70	57	151	11	30	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/1	a0002	162	54	22	15	1	3	12	copy fasta	CAV2	chr7	116494738	116513541
CAV3_chr3_8728802_8751758	1/1	a0001	151	458	85	79	226	18	48	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	a0002	151	18	15	3	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAVIN1_chr17_42397449_42428256	1/1	a0001	390	335	89	50	146	12	36	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	a0002	396	1	1	0	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	a0003	390	1	0	0	1	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	a0004	390	1	0	0	1	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN2_chr2_191829310_191852088	1/1	a0001	425	359	78	58	162	15	44	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	a0002	425	18	9	8	0	1	0	copy fasta	CAVIN2	chr2	191829310	191852088