JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CAVIN2_chr2_191829310_191852088	0/0	a0003	80	1	0	0	1	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	a0004	425	1	1	0	0	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	a0005	425	1	0	0	1	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	a0006	425	1	1	0	0	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	a0007	425	1	1	0	0	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN3_chr11_6313946_6325501	0/1	a0001	261	194	32	23	108	13	17	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	a0002	261	189	36	39	90	5	19	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	a0003	261	17	10	5	0	0	2	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	1/0	a0004	261	17	9	6	0	0	1	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	a0005	254	2	0	1	1	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	a0006	261	2	0	2	0	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	a0007	261	1	0	1	0	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	a0008	261	1	0	0	1	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	a0009	261	1	0	0	0	0	1	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	a0010	261	1	1	0	0	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	a0011	261	1	0	1	0	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN4_chr9_100573079_100593389	1/1	a0001	364	368	90	63	151	18	44	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	a0002	364	7	0	7	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	a0003	364	2	2	0	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	a0004	364	1	1	0	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	a0005	364	1	1	0	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	a0006	364	1	0	0	1	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	a0007	364	1	1	0	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	a0008	364	1	1	0	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CBARP_chr19_1223287_1243005	0/0	a0000	0	25	2	1	18	0	4	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/1	a0001	705	258	52	38	135	8	24	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	1/0	a0002	705	99	37	37	1	8	15	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	a0003	705	12	0	0	12	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	a0004	705	2	0	0	2	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	a0005	705	2	0	0	2	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	a0006	705	1	0	0	0	0	1	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	a0007	705	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	a0008	705	1	0	1	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	a0009	705	1	1	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	a0010	705	1	0	0	0	1	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	a0011	392	1	0	1	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	a0012	705	1	1	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	a0013	705	1	1	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	a0014	705	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	a0015	705	1	0	0	0	1	0	copy fasta	CBARP	chr19	1223287	1243005
CBFA2T2_chr20_33485096_33655030	1/1	a0001	595	295	81	50	110	12	40	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	a0002	595	1	0	0	1	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	a0003	595	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	a0004	595	1	0	0	1	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T3_chr16_88869858_88982207	1/1	a0001	653	273	64	60	100	11	36	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	a0002	653	3	0	3	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	a0003	653	2	0	2	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	a0004	653	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	a0005	653	1	0	1	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	a0006	653	1	0	0	1	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207