JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CBFA2T3_chr16_88869858_88982207	0/0	a0007	653	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	a0008	653	1	0	0	0	1	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	a0009	653	1	0	0	1	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFB_chr16_67024149_67106058	1/1	a0001	187	212	90	36	56	6	22	copy fasta	CBFB	chr16	67024149	67106058
CBLB_chr3_105650461_105874012	1/1	a0001	982	359	74	62	177	14	30	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	a0002	982	7	6	1	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	a0003	982	6	0	0	6	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	a0004	982	2	0	2	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	a0005	982	1	0	1	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	a0006	982	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	a0007	982	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	a0008	982	1	0	0	0	0	1	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	a0009	982	1	0	0	0	0	1	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	a0010	982	1	0	0	1	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLC_chr19_44772890_44805652	0/0	a0000	0	47	24	2	18	0	3	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	1/1	a0001	474	260	52	48	128	5	25	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	a0002	474	20	6	5	6	0	3	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	a0003	474	9	5	2	0	1	1	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	a0004	474	3	3	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	a0005	474	2	2	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	a0006	7	1	1	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	a0007	474	1	0	1	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	a0008	474	1	1	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLIF_chr11_59824273_59850499	1/1	a0001	417	282	37	60	142	18	23	copy fasta	CBLIF	chr11	59824273	59850499
CBLIF_chr11_59824273_59850499	0/0	a0002	417	40	27	4	8	0	1	copy fasta	CBLIF	chr11	59824273	59850499
CBLIF_chr11_59824273_59850499	0/0	a0003	417	15	14	1	0	0	0	copy fasta	CBLIF	chr11	59824273	59850499
CBLIF_chr11_59824273_59850499	0/0	a0004	417	4	3	1	0	0	0	copy fasta	CBLIF	chr11	59824273	59850499
CBLIF_chr11_59824273_59850499	0/0	a0005	417	1	1	0	0	0	0	copy fasta	CBLIF	chr11	59824273	59850499
CBLL1_chr7_107739142_107766667	1/1	a0001	491	431	98	76	199	16	40	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	a0002	491	1	0	0	1	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL2_chrX_22267913_22279461	1/1	a0001	425	176	20	36	85	12	21	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	a0002	425	160	54	24	76	1	5	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	a0003	425	2	2	0	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	a0004	425	1	1	0	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	a0005	425	1	0	1	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	a0006	334	1	0	0	1	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	a0007	228	1	1	0	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	a0008	425	1	0	1	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	a0009	424	1	0	0	1	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	a0010	425	1	1	0	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	a0011	44	1	0	0	1	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLN1_chr16_49272917_49286838	1/1	a0001	193	394	88	70	170	18	46	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	a0002	193	2	0	0	2	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN2_chr18_72531681_72549342	1/1	a0001	224	410	87	70	208	10	33	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	a0002	224	5	5	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	a0003	224	1	0	0	0	0	1	copy fasta	CBLN2	chr18	72531681	72549342
CBLN3_chr14_24421545_24434668	0/0	a0000	0	1	0	0	0	1	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	1/1	a0001	205	450	90	76	217	17	48	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	a0002	205	1	0	0	1	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN4_chr20_55992357_56010519	1/1	a0001	201	426	100	66	204	16	38	copy fasta	CBLN4	chr20	55992357	56010519