JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CBX5_chr12_54225942_54285122	1/1	a0001	191	367	91	66	154	16	38	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	a0002	191	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX6_chr22_38856422_38877216	0/0	a0000	0	6	1	0	5	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	1/1	a0001	412	374	87	72	159	16	38	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	a0002	286	12	6	1	4	0	1	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	a0003	250	9	1	1	6	0	1	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	a0004	412	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	a0005	412	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	a0006	412	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	a0007	412	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	a0008	412	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX7_chr22_39125772_39157680	1/1	a0001	251	380	90	68	158	14	48	copy fasta	CBX7	chr22	39125772	39157680
CBX8_chr17_79787132_79802077	0/1	a0001	389	233	87	49	65	8	23	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	1/0	a0002	389	160	10	24	94	6	25	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	a0003	186	10	3	3	4	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	a0004	389	2	0	1	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	a0005	389	2	0	2	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	a0006	389	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	a0007	389	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	a0008	389	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	a0009	389	1	0	1	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	a0010	389	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBY1_chr22_38651638_38678850	1/1	a0001	126	381	91	62	170	18	38	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	a0002	126	1	1	0	0	0	0	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	a0003	126	1	0	0	1	0	0	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	a0004	126	1	0	0	1	0	0	copy fasta	CBY1	chr22	38651638	38678850
CBY2_chr13_45697320_45719559	1/1	a0001	448	212	49	34	100	4	23	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	a0002	448	163	30	32	71	11	19	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	a0003	285	36	1	4	26	2	3	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	a0004	70	22	15	6	0	0	1	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	a0005	448	2	0	0	0	0	2	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	a0006	448	2	0	0	2	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	a0007	448	1	1	0	0	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	a0008	448	1	0	0	0	1	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	a0009	448	1	0	0	1	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY3_chr5_179673560_179686034	1/1	a0001	242	388	72	74	180	18	42	copy fasta	CBY3	chr5	179673560	179686034
CBY3_chr5_179673560_179686034	0/0	a0002	242	21	19	2	0	0	0	copy fasta	CBY3	chr5	179673560	179686034
CBY3_chr5_179673560_179686034	0/0	a0003	242	1	1	0	0	0	0	copy fasta	CBY3	chr5	179673560	179686034
CBY3_chr5_179673560_179686034	0/0	a0004	242	1	1	0	0	0	0	copy fasta	CBY3	chr5	179673560	179686034
CBY3_chr5_179673560_179686034	0/0	a0005	242	1	1	0	0	0	0	copy fasta	CBY3	chr5	179673560	179686034
CC2D1A_chr19_13901201_13935879	1/1	a0001	951	234	62	37	98	7	28	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0002	951	59	0	8	36	5	10	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0003	951	28	0	15	8	2	3	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0004	951	21	20	0	0	0	1	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0005	951	5	0	0	5	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0006	951	3	3	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0007	951	2	2	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0008	951	2	0	0	2	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0009	951	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0010	951	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879