Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACP3_chr3_132312407_132363841	0/0	a0002	386	5	5	0	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	a0003	386	2	0	0	2	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	a0004	386	2	0	0	2	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	a0005	386	1	0	0	1	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP4_chr19_50785415_50800219	1/0	a0001	426	228	65	64	62	9	27	copy fasta	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/1	a0002	426	140	14	17	86	5	17	copy fasta	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	a0003	426	7	6	1	0	0	0	copy fasta	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	a0004	425	3	3	0	0	0	0	copy fasta	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	a0005	426	2	0	2	0	0	0	copy fasta	ACP4	chr19	50785415	50800219
ACP5_chr19_11569660_11582645	1/1	a0001	325	372	70	70	178	14	38	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	a0002	325	36	0	7	18	3	8	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	a0003	325	25	23	2	0	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	a0004	325	4	3	0	0	1	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	a0005	325	1	1	0	0	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	a0006	325	1	0	0	0	0	1	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	a0007	325	1	0	0	1	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	a0008	116	1	0	0	0	0	1	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	a0009	325	1	1	0	0	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	a0010	325	1	0	1	0	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	a0011	325	1	0	0	1	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP6_chr1_147637230_147675524	1/1	a0001	428	387	76	61	194	14	40	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	a0002	428	11	11	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	a0003	428	2	1	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	a0004	428	2	2	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	a0005	428	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	a0006	428	1	0	1	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP7_chr19_39079368_39116493	1/1	a0001	438	395	82	80	175	16	40	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	a0002	438	3	0	3	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	a0003	438	1	1	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	a0004	438	1	0	0	1	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	a0005	438	1	1	0	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	a0006	438	1	0	1	0	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACRBP_chr12_6633075_6652432	1/1	a0001	543	397	86	75	170	16	48	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	a0002	543	8	0	0	8	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	a0003	543	7	0	0	7	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	a0004	543	4	3	1	0	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	a0005	543	2	0	0	2	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	a0006	543	1	0	0	1	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	a0007	543	1	0	1	0	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	a0008	543	1	1	0	0	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	a0009	543	1	0	1	0	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRV1_chr11_125666522_125685847	1/1	a0001	265	396	75	67	204	15	33	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	a0002	265	21	13	4	0	1	3	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	a0003	265	3	0	0	3	0	0	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	a0004	265	2	0	1	0	0	1	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	a0005	265	1	0	0	1	0	0	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	a0006	265	1	0	0	0	0	1	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	a0007	265	1	1	0	0	0	0	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	a0008	265	1	1	0	0	0	0	copy fasta	ACRV1	chr11	125666522	125685847
ACR_chr22_50733204_50750339	0/0	a0001	421	319	61	56	159	6	37	copy fasta	ACR	chr22	50733204	50750339