JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CC2D1A_chr19_13901201_13935879	0/0	a0011	951	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0012	439	1	0	0	1	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0013	951	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0014	951	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0015	951	1	0	1	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0016	951	1	0	1	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0017	951	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0018	951	1	0	0	1	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0019	951	1	0	0	1	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0020	951	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0021	951	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0022	951	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0023	951	1	0	1	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	a0024	951	1	0	1	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1B_chr1_52345597_52371205	1/1	a0001	852	277	87	56	98	9	25	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0002	852	15	5	2	2	1	5	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0003	852	8	0	0	4	0	4	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0004	852	3	0	1	2	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0005	852	3	1	2	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0006	851	3	0	0	3	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0007	852	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0008	852	1	0	1	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0009	852	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0010	852	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0011	604	1	0	1	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0012	852	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0013	852	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0014	852	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0015	852	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0016	852	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0017	852	1	0	1	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0018	852	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	a0019	852	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D2A_chr4_15464882_15606552	1/1	a0001	1620	262	73	42	99	12	34	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0002	1620	45	3	9	29	0	4	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0003	1619	11	1	5	0	2	3	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0004	1620	3	2	1	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0005	1620	3	0	0	3	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0006	1620	3	3	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0007	1620	2	2	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0008	1620	1	0	1	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0009	1620	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0010	1620	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0011	1620	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0012	1620	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0013	1620	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0014	1620	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0015	1620	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0016	1620	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0017	1620	1	0	0	0	0	1	copy fasta	CC2D2A	chr4	15464882	15606552