JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CC2D2A_chr4_15464882_15606552	0/0	a0018	1620	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0019	1620	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0020	1620	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0021	1620	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	a0022	1620	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2B_chr10_95902975_96038745	0/0	a0001	1437	89	13	13	47	7	9	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	1/0	a0002	1437	76	27	21	15	3	9	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0003	1437	38	6	6	23	0	3	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0004	1437	25	5	3	16	0	1	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/1	a0005	1437	23	9	8	1	3	1	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0006	1437	11	2	1	2	0	6	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0007	1437	10	2	7	0	1	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0008	1437	4	2	0	0	0	2	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0009	1437	4	4	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0010	1437	4	3	0	1	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0011	1437	3	1	2	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0012	1437	2	2	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0013	1437	2	1	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0014	1337	2	0	0	2	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0015	1437	2	1	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0016	1437	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0017	1437	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0018	1437	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0019	1437	1	0	0	1	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0020	1434	1	0	0	1	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0021	1437	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0022	1437	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0023	1437	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0024	1437	1	0	0	1	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0025	1434	1	0	0	1	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0026	1437	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0027	1437	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0028	1437	1	0	0	0	0	1	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0029	1437	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0030	1437	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0031	1437	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	a0032	1425	1	0	0	1	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CCAR1_chr10_68716239_68797377	1/1	a0001	1150	357	82	60	162	14	37	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	a0002	1150	2	2	0	0	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	a0003	1150	1	0	0	0	0	1	copy fasta	CCAR1	chr10	68716239	68797377
CCAR2_chr8_22599757_22625471	1/1	a0001	923	353	83	75	133	18	42	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	a0002	923	13	0	0	13	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	a0003	923	2	0	0	2	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	a0004	923	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	a0005	923	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	a0006	923	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	a0007	923	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	a0008	923	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	a0009	923	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	a0010	923	1	0	1	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471