JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCAR2_chr8_22599757_22625471	0/0	a0011	923	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCBE1_chr18_59425939_59702423	1/1	a0001	406	235	83	45	58	12	35	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	a0002	406	3	3	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	a0003	406	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	a0004	406	1	0	1	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	a0005	406	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	a0006	406	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCDC102A_chr16_57507181_57541571	0/1	a0001	550	404	96	67	178	14	48	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	a0002	550	1	1	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	1/0	a0003	550	1	0	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	a0004	550	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	a0005	550	1	1	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	a0006	262	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	a0007	395	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	a0008	550	1	0	1	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	a0009	550	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	a0010	517	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	a0011	550	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	a0012	550	1	1	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	a0013	550	1	1	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102B_chr18_68793080_69060189	0/0	a0001	513	79	21	16	26	2	14	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/1	a0002	513	57	5	14	31	1	5	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0003	513	25	4	6	6	2	7	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	1/0	a0004	513	9	8	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0005	513	6	6	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0006	513	4	3	1	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0007	513	4	0	0	4	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0008	513	3	3	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0009	513	3	3	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0010	513	3	3	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0011	513	2	2	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0012	513	2	2	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0013	513	2	2	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0014	513	2	2	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0015	513	2	2	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0016	513	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0017	513	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0018	513	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0019	513	1	0	1	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0020	513	1	0	0	0	1	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0021	513	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0022	513	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0023	513	1	0	0	1	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0024	513	1	0	0	1	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0025	513	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0026	513	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0027	513	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	a0028	513	1	0	0	1	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC103_chr17_44894729_44910390	1/1	a0001	242	424	98	75	185	18	46	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	a0002	242	1	0	0	1	0	0	copy fasta	CCDC103	chr17	44894729	44910390