JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC103_chr17_44894729_44910390	0/0	a0003	242	1	0	1	0	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC105_chr19_15005726_15028276	0/0	a0001	499	182	58	36	59	13	16	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/1	a0002	499	113	3	26	70	1	12	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	1/0	a0003	499	59	3	9	30	4	12	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0004	499	22	13	0	6	0	3	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0005	499	14	0	0	14	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0006	499	7	1	1	4	0	1	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0007	499	7	0	0	7	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0008	499	7	1	1	3	0	2	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0009	499	6	0	4	2	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0010	499	4	4	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0011	499	3	1	0	1	0	1	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0012	499	2	2	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0013	499	2	1	1	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0014	499	2	2	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0015	499	1	0	0	1	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0016	499	1	1	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0017	499	1	0	0	0	0	1	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0018	499	1	1	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0019	499	1	1	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0020	499	1	0	1	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0021	499	1	0	0	1	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0022	499	1	0	0	1	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0023	499	1	0	1	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	a0024	499	1	0	0	1	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC106_chr19_55643212_55658161	1/1	a0001	280	410	100	83	160	15	50	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	a0002	280	2	0	1	0	1	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC107_chr9_35653292_35666511	0/1	a0001	283	312	26	56	179	13	37	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	1/0	a0002	283	59	36	11	2	2	7	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	a0003	283	29	14	5	7	1	2	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	a0004	283	22	14	2	4	0	2	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	a0005	283	2	2	0	0	0	0	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	a0006	283	1	0	0	1	0	0	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	a0007	283	1	0	0	1	0	0	copy fasta	CCDC107	chr9	35653292	35666511
CCDC110_chr4_185440182_185476733	1/1	a0001	833	162	30	35	77	4	14	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0002	833	148	22	28	67	9	22	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0003	833	95	30	15	41	5	4	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0004	833	4	4	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0005	833	3	3	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0006	833	2	2	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0007	833	2	2	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0008	833	1	0	0	0	0	1	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0009	833	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0010	833	1	0	1	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0011	833	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0012	833	1	0	0	0	0	1	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0013	833	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0014	833	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0015	537	1	0	1	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0016	833	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733