JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC110_chr4_185440182_185476733	0/0	a0017	833	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0018	833	1	0	0	1	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	a0019	833	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC112_chr5_115262190_115301654	1/1	a0001	529	350	93	74	126	15	40	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	a0002	529	26	0	0	26	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	a0003	529	5	4	1	0	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	a0004	529	2	0	2	0	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	a0005	529	1	0	1	0	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	a0006	529	1	0	0	0	1	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	a0007	529	1	0	0	1	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	a0008	529	1	0	0	1	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	a0009	529	1	1	0	0	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC113_chr16_58244936_58288836	1/1	a0001	377	360	70	64	162	18	44	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	a0002	377	13	0	6	7	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	a0003	377	4	4	0	0	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	a0004	377	1	0	0	1	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC115_chr2_130332933_130347164	1/1	a0001	180	383	91	64	170	14	42	copy fasta	CCDC115	chr2	130332933	130347164
CCDC115_chr2_130332933_130347164	0/0	a0002	180	1	1	0	0	0	0	copy fasta	CCDC115	chr2	130332933	130347164
CCDC116_chr22_21627760_21642329	1/0	a0001	613	217	30	36	119	8	23	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0002	613	53	16	19	6	3	9	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0003	613	24	0	1	16	1	6	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0004	613	20	2	9	1	2	6	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/1	a0005	613	18	13	3	1	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0006	613	11	0	0	11	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0007	613	10	0	0	7	1	2	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0008	613	9	8	1	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0009	613	6	6	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0010	613	5	5	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0011	613	5	5	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0012	613	3	3	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0013	613	2	2	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0014	613	2	2	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0015	613	2	2	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0016	613	1	1	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0017	613	1	0	1	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0018	613	1	0	0	1	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0019	613	1	0	0	0	1	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0020	613	1	1	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0021	613	1	1	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	a0022	613	1	1	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC117_chr22_28767695_28794295	1/1	a0001	279	414	84	61	210	11	46	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	a0002	279	2	1	1	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	a0003	279	1	1	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	a0004	279	1	0	0	0	1	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC120_chrX_49053999_49074854	1/1	a0001	696	280	76	48	108	13	33	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	a0002	696	2	0	1	0	0	1	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	a0003	142	1	0	1	0	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	a0004	308	1	0	0	1	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	a0005	504	1	0	1	0	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	a0006	696	1	0	0	1	0	0	copy fasta	CCDC120	chrX	49053999	49074854