JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC136_chr7_128786968_128827130	0/0	a0010	1154	1	0	0	0	1	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	a0011	1154	1	0	1	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	a0012	1154	1	0	0	0	0	1	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	a0013	1154	1	1	0	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	a0014	1154	1	0	0	1	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	a0015	1154	1	1	0	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC137_chr17_81661737_81678899	1/0	a0001	289	300	67	62	125	11	34	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	a0002	289	74	12	3	53	2	4	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	a0003	289	19	5	6	0	3	5	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	a0004	288	7	6	1	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	a0005	289	3	3	0	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/1	a0006	289	2	0	0	0	1	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	a0007	289	2	0	0	0	1	1	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	a0008	289	2	0	0	2	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	a0009	289	2	1	1	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	a0010	289	1	0	1	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC138_chr2_108781771_108881578	1/1	a0001	665	140	59	23	39	7	10	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	a0002	665	36	20	5	5	1	5	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	a0003	665	35	3	8	17	2	5	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	a0004	665	5	5	0	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	a0005	665	1	0	0	1	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	a0006	665	1	1	0	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	a0007	665	1	1	0	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	a0008	665	1	1	0	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC13_chr3_42700756_42778253	1/0	a0001	715	141	36	39	46	4	15	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/1	a0002	715	57	3	7	26	5	15	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0003	715	53	16	12	16	1	8	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0004	715	40	7	3	30	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0005	715	6	0	0	6	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0006	715	4	4	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0007	715	3	3	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0008	715	3	0	0	3	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0009	715	3	3	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0010	715	3	3	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0011	715	2	0	2	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0012	715	1	0	0	1	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0013	715	1	1	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0014	715	1	0	0	0	0	1	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0015	715	1	0	1	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	a0016	715	1	0	0	0	0	1	copy fasta	CCDC13	chr3	42700756	42778253
CCDC141_chr2_178824757_179055137	1/1	a0001	1530	154	48	25	63	4	12	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0002	1530	36	10	11	10	0	5	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0003	1530	21	1	8	6	0	6	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0004	1530	14	7	2	2	0	3	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0005	1530	14	4	0	8	0	2	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0006	1530	6	6	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0007	1530	4	3	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0008	1530	3	0	1	0	0	2	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0009	1530	3	0	2	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0010	1530	2	2	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137