JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC141_chr2_178824757_179055137	0/0	a0011	1530	2	1	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0012	1530	2	0	0	0	2	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0013	1530	2	0	1	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0014	1530	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0015	1530	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0016	1530	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0017	1166	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0018	1530	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0019	1530	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0020	1530	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0021	1530	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0022	408	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0023	1530	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	a0024	1530	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC142_chr2_74467832_74487998	1/1	a0001	750	342	79	66	152	14	29	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0002	750	7	6	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0003	750	5	5	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0004	750	3	2	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0005	750	2	0	0	2	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0006	750	2	0	2	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0007	750	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0008	750	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0009	750	1	0	0	0	0	1	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0010	268	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0011	750	1	0	0	1	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0012	750	1	0	0	1	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0013	750	1	0	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0014	750	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	a0015	750	1	0	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC144A_chr17_16685241_16782881	1/0	a0001	1425	187	35	41	81	9	20	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/1	a0002	1425	112	29	16	49	2	15	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0003	1425	3	3	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0004	1425	3	3	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0005	1425	2	2	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0006	1425	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0007	1425	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0008	811	1	0	0	0	1	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0009	1425	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0010	1425	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0011	1425	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0012	1425	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0013	1425	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0014	1425	1	0	0	0	0	1	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0015	1425	1	0	1	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	a0016	1425	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC146_chr7_77117615_77300204	1/1	a0001	955	127	22	29	41	16	17	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	a0002	955	63	6	9	44	0	4	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	a0003	955	27	25	2	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	a0004	955	9	2	2	4	0	1	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	a0005	955	8	8	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204