JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC146_chr7_77117615_77300204	0/0	a0006	955	5	5	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	a0007	955	2	2	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	a0008	955	2	1	1	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	a0009	955	1	1	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	a0010	955	1	0	0	1	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	a0011	955	1	0	0	0	0	1	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	a0012	955	1	0	0	0	0	1	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	a0013	955	1	0	1	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC148_chr2_158166073_158461753	0/1	a0001	591	158	33	26	74	9	15	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	a0002	591	58	28	2	24	2	2	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	a0003	591	14	0	1	8	3	2	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	1/0	a0004	591	13	4	5	1	2	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	a0005	591	9	0	0	9	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	a0006	591	4	4	0	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	a0007	591	3	3	0	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	a0008	591	2	2	0	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	a0009	591	1	1	0	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	a0010	591	1	1	0	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	a0011	591	1	0	0	0	0	1	copy fasta	CCDC148	chr2	158166073	158461753
CCDC149_chr4_24798514_24918042	1/1	a0001	535	318	88	60	133	6	29	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	a0002	535	28	1	1	25	0	1	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	a0003	535	3	1	2	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	a0004	95	1	0	1	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	a0005	535	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	a0006	535	1	1	0	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	a0007	535	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	a0008	535	1	1	0	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC14_chr3_123908422_123966229	1/0	a0001	905	281	71	33	142	5	29	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/1	a0002	905	72	10	21	16	5	19	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	a0003	905	5	0	0	5	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	a0004	905	2	2	0	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	a0005	905	2	2	0	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	a0006	905	1	0	1	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	a0007	905	1	0	0	1	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	a0008	905	1	0	0	1	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	a0009	905	1	0	1	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	a0010	905	1	0	0	1	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	a0011	905	1	1	0	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC150_chr2_196634715_196737801	1/0	a0001	1101	144	51	37	27	6	22	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/1	a0002	1101	37	14	7	9	0	6	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	a0003	1101	13	13	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	a0004	1101	4	0	0	4	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	a0005	1101	3	0	0	3	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	a0006	1101	3	3	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	a0007	1101	2	2	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	a0008	1101	1	1	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	a0009	1101	1	1	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	a0010	1101	1	0	0	1	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	a0011	1101	1	0	0	1	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	a0012	1101	1	0	0	1	0	0	copy fasta	CCDC150	chr2	196634715	196737801