JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC150_chr2_196634715_196737801	0/0	a0013	1101	1	1	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC152_chr5_42751818_42807439	1/1	a0001	254	338	75	64	146	13	38	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	a0002	254	8	8	0	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	a0003	254	1	1	0	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	a0004	254	1	0	0	0	1	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC153_chr11_119185254_119200841	1/1	a0001	210	290	53	58	123	13	41	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	a0002	210	113	25	16	62	3	7	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	a0003	210	12	12	0	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	a0004	53	8	8	0	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	a0005	210	1	1	0	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	a0006	210	1	0	1	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	a0007	210	1	0	1	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	a0008	210	1	0	0	1	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	a0009	210	1	1	0	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC154_chr16_1429383_1449556	0/1	a0001	667	300	39	62	148	14	36	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0002	667	44	25	4	11	0	4	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0003	667	28	14	4	5	1	4	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0004	667	9	8	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0005	667	6	2	4	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0006	667	2	0	1	0	0	1	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0007	667	2	2	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0008	667	2	0	2	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0009	667	2	0	1	0	1	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0010	667	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0011	667	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0012	667	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0013	667	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0014	667	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0015	667	1	0	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0016	667	1	0	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0017	667	1	0	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0018	667	1	0	0	0	0	1	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0019	667	1	0	0	0	0	1	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0020	667	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0021	667	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0022	667	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	1/0	a0023	667	1	0	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0024	667	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0025	667	1	0	0	0	0	1	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0026	667	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0027	667	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0028	667	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0029	667	1	0	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	a0030	667	1	0	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC157_chr22_30352007_30383673	0/1	a0001	752	351	70	59	173	14	34	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0002	752	45	7	10	19	3	6	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0003	752	9	8	1	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	1/0	a0004	752	5	0	4	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0005	744	4	2	1	0	0	1	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0006	751	3	3	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673