JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC157_chr22_30352007_30383673	0/0	a0007	760	3	3	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0008	752	2	0	0	2	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0009	744	2	0	0	2	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0010	752	1	0	0	0	1	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0011	752	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0012	752	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0013	745	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0014	752	1	0	0	0	0	1	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0015	752	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0016	752	1	1	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0017	744	1	1	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0018	760	1	1	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0019	760	1	0	1	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0020	752	1	0	1	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0021	744	1	0	1	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0022	752	1	0	0	0	0	1	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0023	752	1	0	0	0	0	1	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0024	752	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	a0025	752	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC158_chr4_76308039_76426141	1/1	a0001	1117	310	62	55	146	9	36	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0002	1117	9	9	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0003	1117	7	6	1	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0004	1117	6	0	0	6	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0005	1117	3	3	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0006	1117	2	2	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0007	1117	1	1	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0008	1117	1	0	0	0	0	1	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0009	1117	1	0	0	0	1	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0010	186	1	0	0	1	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0011	1117	1	1	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0012	1117	1	1	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0013	1117	1	0	0	1	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0014	1117	1	0	0	1	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0015	1117	1	1	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0016	1117	1	0	0	0	0	1	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	a0017	1117	1	0	0	1	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC159_chr19_11341519_11359944	1/0	a0001	297	227	38	35	113	10	30	copy fasta	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/1	a0002	297	99	20	27	41	6	4	copy fasta	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	a0003	297	28	24	4	0	0	0	copy fasta	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	a0004	297	2	0	2	0	0	0	copy fasta	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	a0005	297	1	0	0	1	0	0	copy fasta	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	a0006	223	1	0	0	1	0	0	copy fasta	CCDC159	chr19	11341519	11359944
CCDC15_chr11_124949202_125046489	1/0	a0001	951	241	38	61	105	11	25	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/1	a0002	951	80	28	8	32	2	9	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	a0003	951	19	11	4	1	1	2	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	a0004	951	4	0	0	4	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	a0005	951	2	1	1	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	a0006	951	1	0	0	0	0	1	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	a0007	867	1	1	0	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	a0008	951	1	0	0	0	0	1	copy fasta	CCDC15	chr11	124949202	125046489