JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC170_chr6_151489017_151626193	0/0	a0021	715	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	a0022	715	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	a0023	715	1	0	0	0	1	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	a0024	715	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	a0025	715	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	a0026	715	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC171_chr9_15548043_15979037	0/1	a0001	1326	97	21	20	39	3	13	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0002	1326	64	1	14	37	2	10	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	1/0	a0003	1326	31	19	4	5	1	1	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0004	1326	26	0	3	16	0	7	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0005	1326	13	7	4	1	0	1	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0006	1326	8	8	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0007	1326	5	5	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0008	1326	4	0	0	4	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0009	1326	2	0	0	2	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0010	1326	2	0	0	1	0	1	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0011	1326	2	1	1	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0012	264	1	0	0	1	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0013	1326	1	0	0	1	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0014	1326	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0015	1326	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0016	1326	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0017	1326	1	0	0	1	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0018	1326	1	0	0	1	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0019	1326	1	0	1	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0020	1326	1	0	0	1	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0021	1326	1	0	1	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0022	1326	1	0	0	0	0	1	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	a0023	1326	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC172_chr10_116319448_116385029	1/1	a0001	258	336	82	56	160	12	24	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	a0002	258	1	1	0	0	0	0	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	a0003	258	1	1	0	0	0	0	copy fasta	CCDC172	chr10	116319448	116385029
CCDC174_chr3_14646762_14677655	1/1	a0001	467	414	81	76	199	11	45	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	a0002	467	5	5	0	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	a0003	467	3	0	1	0	1	1	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	a0004	467	2	0	2	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	a0005	467	2	2	0	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	a0006	467	2	2	0	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	a0007	467	1	0	0	1	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	a0008	467	1	0	1	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	a0009	467	1	0	0	1	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	a0010	467	1	0	0	1	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC175_chr14_59500067_59581812	0/0	a0001	793	135	29	29	62	3	12	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/1	a0002	793	90	14	24	35	4	12	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	1/0	a0003	793	40	26	7	0	2	4	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	a0004	793	7	0	3	1	3	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	a0005	793	6	6	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	a0006	793	3	3	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	a0007	793	3	3	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	a0008	793	3	0	3	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812