JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC175_chr14_59500067_59581812	0/0	a0009	793	2	1	1	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	a0010	793	2	0	0	0	0	2	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	a0011	793	1	1	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	a0012	793	1	0	1	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	a0013	793	1	1	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC177_chr14_69564799_69579871	0/1	a0001	705	211	43	30	101	12	24	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	a0002	705	54	19	6	19	0	10	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	a0003	706	34	0	3	23	2	6	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	1/0	a0004	707	26	17	3	5	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	a0005	705	4	2	2	0	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	a0006	705	2	0	0	2	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	a0007	705	1	1	0	0	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	a0008	705	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	a0009	705	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	a0010	706	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	a0011	706	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	a0012	705	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	a0013	705	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC178_chr18_32932406_33445721	0/1	a0001	867	27	17	4	2	0	3	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	a0002	867	12	8	1	3	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	a0003	867	10	9	0	0	0	1	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	a0004	867	1	1	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	a0005	867	1	1	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	a0006	867	1	0	0	1	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	a0007	867	1	0	1	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	a0008	867	1	1	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	1/0	a0009	867	1	0	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	a0010	867	1	1	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	a0011	867	1	1	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	a0012	867	1	1	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC179_chr11_22841922_22865474	0/0	a0001	68	232	32	33	132	3	32	copy fasta	CCDC179	chr11	22841922	22865474
CCDC179_chr11_22841922_22865474	1/1	a0002	68	214	56	43	84	11	18	copy fasta	CCDC179	chr11	22841922	22865474
CCDC17_chr1_45615044_45629054	0/1	a0001	622	251	57	40	116	8	29	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	1/0	a0002	622	133	24	34	57	4	13	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0003	622	19	0	0	18	0	1	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0004	622	12	0	2	10	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0005	622	3	2	1	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0006	622	2	0	0	2	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0007	622	2	2	0	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0008	622	2	2	0	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0009	71	1	1	0	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0010	622	1	0	1	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0011	622	1	0	0	1	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0012	566	1	0	1	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0013	622	1	0	0	1	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0014	622	1	1	0	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0015	622	1	0	1	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0016	622	1	0	0	1	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0017	622	1	1	0	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	a0018	622	1	0	0	0	0	1	copy fasta	CCDC17	chr1	45615044	45629054