JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC180_chr9_97302659_97383751	1/1	a0001	1657	108	17	16	55	6	12	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0002	1659	98	10	23	55	1	9	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0003	1659	80	21	19	31	2	7	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0004	1659	24	0	0	24	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0005	1659	11	11	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0006	1659	10	10	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0007	1659	7	6	1	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0008	1659	5	5	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0009	1659	2	2	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0010	1659	2	0	0	0	0	2	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0011	1657	2	0	2	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0012	1659	2	2	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0013	1657	1	0	0	0	1	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0014	1659	1	1	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0015	1659	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0016	1659	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0017	1657	1	0	1	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0018	1657	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0019	1659	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0020	1659	1	0	1	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0021	1659	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0022	1659	1	1	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0023	1659	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0024	1659	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	a0025	1659	1	0	1	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC181_chr1_169389870_169432474	0/1	a0001	509	245	57	40	120	5	22	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	1/0	a0002	509	93	26	28	15	6	17	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	a0003	509	26	9	7	0	5	5	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	a0004	509	1	0	0	1	0	0	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	a0005	509	1	0	1	0	0	0	copy fasta	CCDC181	chr1	169389870	169432474
CCDC182_chr17_57739495_57750299	1/1	a0001	153	255	42	48	127	8	28	copy fasta	CCDC182	chr17	57739495	57750299
CCDC182_chr17_57739495_57750299	0/0	a0002	153	187	43	33	85	6	20	copy fasta	CCDC182	chr17	57739495	57750299
CCDC182_chr17_57739495_57750299	0/0	a0003	153	8	7	1	0	0	0	copy fasta	CCDC182	chr17	57739495	57750299
CCDC182_chr17_57739495_57750299	0/0	a0004	153	4	4	0	0	0	0	copy fasta	CCDC182	chr17	57739495	57750299
CCDC183_chr9_136791338_136812741	0/1	a0001	534	260	63	56	99	10	31	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0002	534	43	3	16	14	3	7	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0003	534	29	2	0	21	2	4	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	1/0	a0004	534	13	0	3	8	0	1	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0005	534	9	4	1	4	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0006	534	7	7	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0007	534	4	4	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0008	534	4	3	1	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0009	534	4	0	0	4	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0010	534	2	0	2	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0011	247	2	1	0	0	0	1	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0012	534	2	2	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0013	245	2	0	0	2	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0014	534	1	0	0	1	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0015	222	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0016	534	1	0	0	0	0	1	copy fasta	CCDC183	chr9	136791338	136812741