JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC183_chr9_136791338_136812741	0/0	a0017	534	1	0	1	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0018	534	1	0	1	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0019	534	1	0	0	1	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0020	534	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0021	534	1	0	0	1	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0022	534	1	0	0	1	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0023	245	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0024	534	1	0	1	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0025	534	1	0	0	0	1	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0026	534	1	0	0	0	0	1	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0027	534	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0028	534	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0029	222	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	a0030	534	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC184_chr12_48178644_48190926	0/0	a0001	194	228	63	40	82	11	32	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	1/1	a0002	194	181	32	34	96	3	14	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	a0003	194	1	1	0	0	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC185_chr1_223388415_223400465	1/0	a0001	623	262	62	48	116	9	26	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	a0002	623	79	24	16	27	5	7	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/1	a0003	623	37	3	2	24	0	7	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	a0004	623	5	0	0	5	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	a0005	623	3	0	0	3	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	a0006	623	2	2	0	0	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	a0007	623	2	0	0	2	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	a0008	623	2	0	0	2	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	a0009	623	2	2	0	0	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	a0010	623	1	1	0	0	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	a0011	623	1	0	0	1	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC186_chr10_114115862_114179203	1/1	a0001	898	205	57	45	73	7	21	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	a0002	898	63	25	15	13	4	6	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	a0003	898	4	0	2	0	1	1	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	a0004	898	2	2	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	a0005	898	2	0	0	2	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	a0006	898	1	0	1	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	a0007	898	1	0	1	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC187_chr9_136244973_136309094	0/0	a0001	2077	23	0	11	9	2	1	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0002	2077	18	1	3	12	1	1	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0003	2077	17	0	2	8	1	6	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0004	2077	17	1	6	8	0	2	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0005	2077	11	0	1	10	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0006	2077	9	0	0	5	0	4	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0007	2077	7	0	2	5	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0008	2077	7	0	0	7	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0009	2077	7	0	6	0	0	1	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0010	2077	6	0	0	5	0	1	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0011	2077	6	0	0	6	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0012	2077	6	0	0	6	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0013	2077	6	1	2	0	1	2	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0014	2077	4	0	0	4	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0015	2077	4	4	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094