JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC187_chr9_136244973_136309094	0/0	a0166	1659	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0167	2077	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0168	2077	1	0	0	0	1	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0169	2077	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0170	2077	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0171	2077	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0172	1659	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0173	2077	1	0	0	0	0	1	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0174	2077	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0175	2077	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0176	2077	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0177	2077	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0178	2077	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0179	2077	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0180	1659	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0181	2077	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0182	2077	1	0	0	0	1	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0183	2077	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0184	2077	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0185	2077	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0186	2077	1	0	0	0	0	1	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0187	2077	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0188	2077	1	0	1	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0189	2077	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	a0190	2077	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC188_chr22_20143416_20156055	1/1	a0001	402	402	92	68	184	18	38	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	a0002	402	2	0	0	0	0	2	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	a0003	402	2	0	0	2	0	0	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	a0004	402	2	2	0	0	0	0	copy fasta	CCDC188	chr22	20143416	20156055
CCDC18_chr1_93175724_93283730	0/0	a0001	1455	110	9	25	60	5	11	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	a0002	1455	110	16	21	60	2	11	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	1/0	a0003	1455	51	31	11	2	3	3	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	a0004	1455	32	22	2	8	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	a0005	1455	3	0	3	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	a0006	1455	2	0	0	0	2	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	a0007	1455	1	0	0	0	0	1	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	a0008	1455	1	1	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	a0009	1455	1	1	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	a0010	1455	1	1	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/1	a0011	1455	1	0	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	a0012	1455	1	0	0	1	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	a0013	1455	1	0	0	1	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	a0014	1455	1	1	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC190_chr1_162846020_162866175	1/0	a0001	301	433	93	68	218	11	42	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/1	a0002	301	23	4	9	1	5	3	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	a0003	301	3	0	0	0	0	3	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	a0004	301	1	0	0	1	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	a0005	301	1	0	1	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC190_chr1_162846020_162866175	0/0	a0006	301	1	1	0	0	0	0	copy fasta	CCDC190	chr1	162846020	162866175
CCDC191_chr3_113959137_114061526	1/1	a0001	936	307	74	45	146	11	29	copy fasta	CCDC191	chr3	113959137	114061526