JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC191_chr3_113959137_114061526	0/0	a0002	936	52	7	14	27	1	3	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	a0003	936	4	0	0	4	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	a0004	936	3	0	1	0	2	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	a0005	936	2	0	2	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	a0006	936	2	1	1	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	a0007	936	2	0	0	2	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	a0008	936	1	0	0	0	0	1	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	a0009	936	1	1	0	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	a0010	936	1	0	1	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	a0011	756	1	0	1	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	a0012	936	1	0	0	1	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	a0013	936	1	1	0	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	a0014	936	1	0	1	0	0	0	copy fasta	CCDC191	chr3	113959137	114061526
CCDC191_chr3_113959137_114061526	0/0	a0015	936	1	0	0	0	0	1	copy fasta	CCDC191	chr3	113959137	114061526
CCDC192_chr5_127698391_127946507	1/1	a0001	273	229	67	47	79	8	26	copy fasta	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	a0002	273	2	2	0	0	0	0	copy fasta	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	a0003	273	2	1	1	0	0	0	copy fasta	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	a0004	273	1	0	0	1	0	0	copy fasta	CCDC192	chr5	127698391	127946507
CCDC194_chr19_17382196_17399196	0/1	a0001	234	213	37	57	74	10	34	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	1/0	a0002	234	196	55	18	104	4	14	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	a0003	234	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	a0004	234	1	0	1	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	a0005	234	1	1	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	a0006	234	1	0	0	1	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	a0007	234	1	1	0	0	0	0	copy fasta	CCDC194	chr19	17382196	17399196
CCDC195_chr2_224698764_224721365	1/1	a0001	201	408	87	72	191	16	40	copy fasta	CCDC195	chr2	224698764	224721365
CCDC195_chr2_224698764_224721365	0/0	a0002	74	3	0	0	3	0	0	copy fasta	CCDC195	chr2	224698764	224721365
CCDC195_chr2_224698764_224721365	0/0	a0003	201	1	1	0	0	0	0	copy fasta	CCDC195	chr2	224698764	224721365
CCDC196_chr14_66481371_66503553	1/1	a0001	297	361	88	69	154	10	38	copy fasta	CCDC196	chr14	66481371	66503553
CCDC196_chr14_66481371_66503553	0/0	a0002	297	2	0	2	0	0	0	copy fasta	CCDC196	chr14	66481371	66503553
CCDC196_chr14_66481371_66503553	0/0	a0003	297	1	0	1	0	0	0	copy fasta	CCDC196	chr14	66481371	66503553
CCDC197_chr14_93992301_94013863	0/1	a0001	272	225	55	64	56	13	36	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	a0002	272	140	23	9	93	4	11	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	a0003	272	8	5	2	0	1	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	a0004	272	7	7	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	a0005	272	3	3	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	a0006	272	2	2	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	a0007	272	2	2	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	a0008	36	1	0	0	1	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	a0009	272	1	0	0	0	0	1	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	a0010	272	1	0	0	1	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	a0011	272	1	1	0	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	a0012	272	1	0	1	0	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC197_chr14_93992301_94013863	0/0	a0013	272	1	0	0	1	0	0	copy fasta	CCDC197	chr14	93992301	94013863
CCDC198_chr14_57464300_57498857	0/1	a0001	296	317	57	67	140	14	38	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	1/0	a0002	296	38	34	3	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	a0003	182	3	0	3	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	a0004	296	3	2	1	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC198_chr14_57464300_57498857	0/0	a0005	296	1	1	0	0	0	0	copy fasta	CCDC198	chr14	57464300	57498857
CCDC200_chr17_43216420_43233623	1/1	a0001	168	328	81	71	120	10	44	copy fasta	CCDC200	chr17	43216420	43233623